From PneumoWiki
Jump to navigation Jump to search
PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

Summary[edit | edit source]

  • pan ID?: PNEUPAN002238000
  • symbol?:
  • synonym:
  • description?: gamma-glutamyl-gamma-aminobutyrate hydrolase family protein

      descriptions from strain specific annotations:

    • gamma-glutamyl-gamma-aminobutyrate hydrolase family protein
    • glutamine amidotransferase, class I
    • putative peptidase
    • gamma-glutamyl hydrolase
    • Putative glutamine amidotransferase
    • class I glutamine amidotransferase, putative
    • Conserved hypothetical protein
    • glutamine amidotransferase
    • Para-aminobenzoate synthase, amidotransferase component
    • peptidase C26
    • Predicted glutamine amidotransferase
  • strand?: -
  • coordinates?: 2694110..2694799
  • occurrence?: in 100% of 41 strains

Orthologs[edit | edit source]

Genome Viewer[edit | edit source]

TIGR4
D39
D39V
Hungary19A-6
EF3030

Alignments[edit | edit source]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.505)


    TIGR4           MKKPVIGITGNEKTHPDDDIMMSYAAKGFVEGVKDAGGIPIILPIGDQEMACHYISLIDK
    D39             MKKPVIGITGNEKTHPDDDIMMSYAAKGFVEGVKDAGGIPIILPIGDQEMACHYISLIDK
    D39V            MKKPVIGITGNEKTHPDDDIMMSYAAKGFVEGVKDAGGIPIILPIGDQEMACHYISLIDK
    Hungary19A-6    MKKPVIGITGNEKAHPDDDIMMSYAAKGFVEGVKDAGGIPIILPIGDQEMACHYISLIDK
    EF3030          MKKPVIGITGNEKAHPDDDIMMSYAAKGFVEGVKDAGGIPIILPIGDQEMACHYISLIDK
                    *************:**********************************************

    TIGR4           LILTGGQNVDPKFYGEPKTIDSDDYHLQRDIFELALIKEAIKQKKPIFSVCRGTQLFNVA
    D39             LILTGGQNVDPKFYGEPKTIDSDDYHLQRDIFELALIKEAIKQKKPIFSVCRGTQLFNVA
    D39V            LILTGGQNVDPKFYGEPKTIDSDDYHLQRDIFELALIKEAIKQKKPIFSVCRGTQLFNVA
    Hungary19A-6    LILTGGQNVDPKFYGEPKTIDSDDYHLQRDIFELALIKEAIKQKKPIFSVCRGTQLFNVA
    EF3030          LILTGGQNVDPKFYGEPKTIDSDDYHLQRDIFELALIKEAIKQKKPIFSVCRGTQLFNVA
                    ************************************************************

    TIGR4           MGGTLYQDIEDHWQDSSVEYTTQRLVTEPDTVLQEIYGEISHINSFHHQSIKDLAPNLKV
    D39             MGGTLYQDIEDHWQDSSVEYTTQRLVTETDTVLQEIYGEISHINSFHHQSIKDLAPNLKV
    D39V            MGGTLYQDIEDHWQDSSVEYTTQRLVTETDTVLQEIYGEISHINSFHHQSIKDLAPNLKV
    Hungary19A-6    MGGTLYQDIEDHWQDSSVEYTTQRLVTEPDTVLQEIYGEISHINSFHHQSIKDLAPNLKV
    EF3030          MGGTLYQDIEDHWQDSSVEYTTQRLVTEPDTVLQEIYGEISHINSFHHQSIKDLAPNLKV
                    ****************************.*******************************

    TIGR4           VAHDPKDGIIEAVMSTDDVAFLGVQWHPELLFENRPKDKKLFDYVVNEL
    D39             VAHDPKDGIIEAVMSTDDVAFLGVQWHPELLFENRPKDKKLFDYVVNEL
    D39V            VAHDPKDGIIEAVMSTDDVAFLGVQWHPELLFENRPKDKKLFDYVVNEL
    Hungary19A-6    VAHDPKDGIIEAVMSTDDVAFLGVQWHPELLFENRPKDKKLFDYVVNEL
    EF3030          VAHDPKDGIIEAVMSTDDVAFLGVQWHPELLFENRPKDKKLFDYVVNEL
                    *************************************************