PangenomeTIGR4

serotype 4

D39

serotype 2

D39V

serotype 2

Hungary19A-6

serotype 19A

EF3030

serotype 19F

670-6B

serotype 6B

6A-10

serotype 6A

70585

serotype 5

A026

serotype 19F

A66

serotype 3

AP200

serotype 11A

ASP0581

serotype 12F

ATCC 49619

serotype 19F

ATCC 700669

serotype 23F

BM6001

serotype 19F

BVJ1JL

serotype 1

CGSP14

serotype 14

G54

serotype 19F

HU-OH

serotype 3

Hu15

serotype 19A

Hu17

serotype 19A

INV104

serotype 1

INV200

serotype 14

JJA

serotype 14

MDRSPN001

serotype 19F

NCTC7465

serotype 1

NCTC7466

serotype 2

NU83127

serotype 4

OXC141

serotype 3

P1031

serotype 1

R6

serotype 2

SP49

serotype 19A

SPN032672

serotype 1

SPN034156

serotype 3

SPN034183

serotype 3

SPN994038

serotype 3

SPN994039

serotype 3

SPNA45

serotype 3

ST556

serotype 19F

TCH8431/19A

serotype 19A

Taiwan19F-14

serotype 19F

Xen35

serotype 4

gamPNI0373

serotype 1

⊟Summary

• pan ID^?: PNEUPAN002460000
• symbol^?: —
• synonym:
• description^?: DEAD/DEAH box helicase family protein

  descriptions from strain specific annotations:

  • DEAD/DEAH box helicase family protein
  • type II restriction endonuclease
  • putative type II restriction endonuclease
  • restriction endonuclease
  • SNF2 family N-terminal domain protein
  • type II restriction endonuclease, putative
  • Type II restriction-modification system endonuclease
  • Uncharacterized restriction enzyme, interrupted-C
  • pseudogene
• strand^?: -
• coordinates^?: 3147174..3153255
• occurrence^?: in 26% of 43 strains

⊟Orthologs

(4)^?
TIGR4:
SP_RS05985
(2)
D39:
SPD_RS05775
(2)
D39V:
SPV_RS05765
(19A)
Hungary19A-6:
—
(19F)
EF3030:
—
(6B)^?
670-6B:
—
(6A)
6A-10:
HKM25_RS05730
(5)
70585:
—
(19F)
A026:
—
(3)
A66:
A66_RS05515
(11A)
AP200:
—
(12F)
ASP0581:
EL334_RS06320
(19F)
ATCC 49619:
—
(23F)
ATCC 700669:
—
(19F)
BM6001:
—
(1)
BVJ1JL:
—
(14)
CGSP14:
—
(19F)
G54:
—
(1)
gamPNI0373:
—
(3)
HU-OH:
—
(19A)
Hu15:
—
(19A)
Hu17:
—
(1)
INV104:
—
(14)
INV200:
—
(14)
JJA:
—
(19F)
MDRSPN001:
—
(1)
NCTC7465:
—
(2)
NCTC7466:
DQM66_RS05775
(4)
NU83127:
EL277_RS06010
(3)
OXC141:
—
(1)
P1031:
—
(2)
R6:
SPR_RS05495
(19A)
SP49:
—
(1)
SPN032672:
—
(3)
SPN034156:
—
(3)
SPN034183:
—
(3)
SPN994038:
—
(3)
SPN994039:
—
(3)
SPNA45:
SPNA45_RS05440
(19F)
ST556:
—
(19F)
Taiwan19F-14:
—
(19A)
TCH8431/19A:
—
(4)
Xen35:
CXP32_RS06050

⊟Genome Viewer

TIGR4
D39
D39V

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
  
  
  TIGR4           MPVEIKTTKEIHPKIYAYTTPTVTSNEGWIKIGYTERDVTQRIKEQTHTAHIATDVLWTG
  D39             MPVEIKTTKEIHPKIYAYTTPTVTSNEGWIKIGYTERDVTQRIKEQTHTAHIATDVLWTG
  D39V            MPVEIKTTKEIHPKIYAYTTPTVTSNEGWIKIGYTERDVTQRIKEQTHTAHIATDVLWTG
                  ************************************************************
  
  TIGR4           DAAYTEEPDKGKTFKDHDFHHFLSFHDVERRPKTEWFYFNGTPEKSKNLFDKFVQHDLSG
  D39             DAAYTEEPDKGKTFKDHDFHHFLSFHDVERRPKTEWFYFNGTPEKSKNLFDKFVQHDLSG
  D39V            DAAYTEEPDKGKTFKDHDFHHFLSFHDVERRPKTEWFYFNGTPEKSKNLFDKFVQHDLSG
                  ************************************************************
  
  TIGR4           YQPGKGQDYTLRQEQEEAVAKTLAYFQEHAGGKFLWNAKPRFGKTLSTYDLARRMEAVNV
  D39             YQPGKGQDYTLRQEQEEAVAKTLAYFQEHAGGKFLWNAKPRFGKTLSTYDLARRMEAVNV
  D39V            YQPGKGQDYTLRQEQEEAVAKTLAYFQEHAGGKFLWNAKPRFGKTLSTYDLARRMEAVNV
                  ************************************************************
  
  TIGR4           LIVTNRPAIANSWYDDFETFIAGQTTYKFVSESDSLKSRPILSRQEFLGILADDVRQLAF
  D39             LIVTNRPAIANSWYDDFETFIAGQTTYKFVSESDSLKSRPILSRQEFLGILADDVRQLAF
  D39V            LIVTNRPAIANSWYDDFETFIAGQTTYKFVSESDSLKSRPILSRQEFLGILADDVRQLAF
                  ************************************************************
  
  TIGR4           ISLQDLKGSVYLGGEHDKLKWVTDLHWDLLVIDEAHEGVDTFKTDQAFNKIRRNFTLHLS
  D39             ISLQDLKGSVYLGGEHDKLKWVTDLHWDLLVIDEAHEGVDTFKTDQAFNKIRRNFTLHLS
  D39V            ISLQDLKGSVYLGGEHDKLKWVTDLHWDLLVIDEAHEGVDTFKTDQAFNKIRRNFTLHLS
                  ************************************************************
  
  TIGR4           GTSFKALAKGDFTEEQIYNWSYADEQAAKYSWSLEQEEENPYESLPQLNLFTYQMSQMIG
  D39             GTSFKALAKGDFTEEQIYNWSYADEQAAKYSWSLEQEEENPYESLPQLNLFTYQMSQMIG
  D39V            GTSFKALAKGDFTEEQIYNWSYADEQAAKYSWSLEQEEENPYESLPQLNLFTYQMSQMIG
                  ************************************************************
  
  TIGR4           EKLEKGAQIDGENIDYVFDLSEFFATDDKGKFIHEHDVRNWLDTLSSNEKYPFSTKELRN
  D39             EKLEKGAQIDGENIDYVFDLSEFFATDDKGKFIHEHDVRNWLDTLSSNEKYPFSTKELRN
  D39V            EKLEKGAQIDGENIDYVFDLSEFFATDDKGKFIHEHDVRNWLDTLSSNEKYPFSTKELRN
                  ************************************************************
  
  TIGR4           ELKHTFWLLERVASAKALKALLEEHPIYENYEIVLAAGDGRMSEEDDKVKLKSLDLVRKA
  D39             ELKHTFWLLERVASAKALKALLEEHPIYENYEIVLAAGDGRMSEEDDKVKLKSLDLVRKA
  D39V            ELKHTFWLLERVASAKALKALLEEHPIYENYEIVLAAGDGRMSEEDDKVKLKSLDLVRKA
                  ************************************************************
  
  TIGR4           IAENDKTITLSVGQLTTGVTIPEWTGVLMLSNLKSPALYMQAAFRAQNPYSWSDNKGNHF
  D39             IAENDKTITLSVGQLTTGVTIPEWTGVLMLSNLKSPALYMQAAFRAQNPYSWSDNKGNHF
  D39V            IAENDKTITLSVGQLTTGVTIPEWTGVLMLSNLKSPALYMQAAFRAQNPYSWSDNKGNHF
                  ************************************************************
  
  TIGR4           RKERAYVFDFAPERTLILFDEFANNLLLVTAAGRGTSATREENIRELLNFFPIIAEDRAG
  D39             RKERAYVFDFAPERTLILFDEFANNLSLVTAAGRGTSATREENIRELLNFFPIIAEDRAG
  D39V            RKERAYVFDFAPERTLILFDEFANNLSLVTAAGRGTSATREENIRELLNFFPIIAEDRAG
                  ************************** *********************************
  
  TIGR4           KMVEIDAKAVLTTPRQIKAREVLKRGFMSNLLFDNISGIFQASQTVLDILNELPVEKEGK
  D39             KMVEIDAKAVLTTPRQIKAREVLKRGFMSNLLFDNISGIFQASQTVLDILNELPVEKEGK
  D39V            KMVEIDAKAVLTTPRQIKAREVLKRGFMSNLLFDNISGIFQASQTVLDILNELPVEKEGK
                  ************************************************************
  
  TIGR4           VQDSSDLLDFSDVTVDDEGNAVVDHEIVVNQQMRLFGEKVYGLGESVAELVTKDEERTQK
  D39             VQDSSDLLDFSDVTVDDEGNAVVDHEIVVNQQMRLFGEKVYGLGESVAELVTKDEERTQK
  D39V            VQDSSDLLDFSDVTVDDEGNAVVDHEIVVNQQMRLFGEKVYGLGESVAELVTKDEERTQK
                  ************************************************************
  
  TIGR4           QLVNDLSKTVSSVIVEELKADYSLKTRETEQIKKQITATLENEIRKNDIERKISEAHIKQ
  D39             QLVNDLSKTVSSVIVEELKADYSLKTRETEQIKKQITATLENEIRKNDIERKISEAHIKQ
  D39V            QLVNDLSKTVSSVIVEELKADYSLKTRETEQIKKQITATLENEIRKNDIERKISEAHIKQ
                  ************************************************************
  
  TIGR4           ELQQQLKEANDKAQKDKIQEDLEKRLEENKLIHKEKLEQTLKKEVEKMPEKFIEQVEIKR
  D39             ELQQQLKEANDKAQKDKIQEDLEKRLEENKLIHKEKLEQTLKKEVEKMPEKFIEQVEIKR
  D39V            ELQQQLKEANDKAQKDKIQEDLEKRLEENKLIHKEKLEQTLKKEVEKMPEKFIEQVEIKR
                  ************************************************************
  
  TIGR4           VEQLKQSAQDEIRDHLRGFARTIPSFIMAYGDQTLTLDNFDAFVPEHVFYEVTGITIDQF
  D39             VEQLKQSAQDEIRDHLRGFARTIPSFIMAYGDQTLTLDNFDAFVPEHVFYEVTGITIDQF
  D39V            VEQLKQSAQDEIRDHLRGFARTIPSFIMAYGDQTLTLDNFDAFVPEHVFYEVTGITIDQF
                  ************************************************************
  
  TIGR4           RYLRDGGQDFAGHLFDKATFDEAIQEFLRKKKELADYFKDQKEDIFDYIPPQKTNQIFTP
  D39             RYLRDGGQDFAGHLFDKATFDEAIQEFLRKKKELADYFKDQKEDIFDYIPPQKTNQIFTP
  D39V            RYLRDGGQDFAGHLFDKATFDEAIQEFLRKKKELADYFKDQKEDIFDYIPPQKTNQIFTP
                  ************************************************************
  
  TIGR4           KRVVKRMVDDLEKENPGIFDDPSKTFIDLYMKSGLYIAELVKRLYNSNGLKEAFPNPEER
  D39             KRVVKRMVDDLEKENPGIFDDPSKTFIDLYMKSGLYIAELVKRLYNSNGLKEAFPNPEER
  D39V            KRVVKRMVDDLEKENPGIFDDPSKTFIDLYMKSGLYIAELVKRLYNSNGLKEAFPNPEER
                  ************************************************************
  
  TIGR4           LKHILEKQVYGFAPSEIIYNISTNFIFGNLSKDISRKNFVLADTIPAAKEGSIQKLVDSY
  D39             LKHILEKQVYGFAPSEIIYNISTNFIFGNLSKDISRKNFVLADTIPAAKEGSIQKLVDSY
  D39V            LKHILEKQVYGFAPSEIIYNISTNFIFGNLSKDISRKNFVLADTIPAAKEGSIQKLVDSY
                  ************************************************************
  
  TIGR4           FENN
  D39             FENN
  D39V            FENN
                  ****