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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 12-FEB-2025

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae NU83127
  • locus tag: EL277_RS06010 [old locus tag: SPNU_1143 ]
  • pan locus tag?: PNEUPAN002460000
  • symbol: EL277_RS06010
  • pan gene symbol?: —
  • synonym:
  • product: DEAD/DEAH box helicase family protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: EL277_RS06010 [old locus tag: SPNU_1143 ]
  • symbol: EL277_RS06010
  • product: DEAD/DEAH box helicase family protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1147305..1150559
  • length: 3255
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: NZ_AP018936 (1147305..1150559) NCBI
  • BioCyc: EL277_RS06010 BioCyc
  • MicrobesOnline:
  • PneumoBrowse for strain D39V: SPV_1079 PneumoBrowse

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    1861
    1921
    1981
    2041
    2101
    2161
    2221
    2281
    2341
    2401
    2461
    2521
    2581
    2641
    2701
    2761
    2821
    2881
    2941
    3001
    3061
    3121
    3181
    3241
    ATGCCAGTAGAAATTAAAACCACTAAAGAAATTCATCCTAAAATCTATGCCTACACCACA
    CCGACAGTAACCAGTAATGAAGGCTGGATTAAGATTGGGTATACAGAACGTGATGTCACA
    CAACGTATCAAGGAGCAAACGCATACAGCTCATATAGCTACAGATGTCTTATGGACTGGT
    GATGCAGCTTATACAGAAGAGCCTGATAAGGGGAAAACTTTCAAGGACCATGATTTCCAC
    CATTTCCTTTCTTTCCATGATGTAGAACGTCGTCCCAAGACGGAATGGTTCTATTTTAAT
    GGAACTCCTGAAAAATCAAAAAATCTTTTTGATAAGTTTGTTCAGCATGATTTGTCTGGT
    TATCAGCCTGGAAAAGGACAGGACTATACTCTGCGACAAGAGCAAGAAGAAGCAGTTGCT
    AAGACATTAGCTTATTTCCAAGAACATGCTGGAGGCAAGTTTCTCTGGAATGCCAAGCCA
    CGCTTTGGTAAAACCTTGTCTACCTATGACCTAGCTCGACGGATGGAAGCTGTCAATGTC
    CTAATTGTAACAAACCGCCCTGCCATTGCTAACTCATGGTATGATGATTTTGAAACATTC
    ATAGCAGGTCAAACGACTTACAAGTTTGTTTCTGAATCAGATAGCCTTAAGAGTCGTCCA
    ATCTTGTCACGACAAGAATTTCTTGGTATTTTAGCTGACGATGTAAGACAACTTGCTTTT
    ATCAGTCTCCAAGACTTGAAAGGATCTGTTTATTTAGGTGGAGAGCACGATAAACTCAAA
    TGGGTAACTGATCTGCATTGGGACTTGTTGGTTATTGACGAGGCTCATGAAGGAGTTGAT
    ACCTTCAAGACTGACCAAGCCTTTAATAAGATTCGACGAAATTTTACTCTGCATTTGTCA
    GGTACATCATTTAAAGCATTGGCTAAAGGAGATTTTACAGAGGAACAAATCTACAACTGG
    TCTTATGCTGATGAGCAGGCTGCTAAGTATTCGTGGTCTCTTGAGCAAGAAGAGGAAAAT
    CCTTATGAAAGCTTGCCTCAGTTGAATCTCTTTACCTATCAAATGTCTCAGATGATTGGC
    GAAAAGTTAGAAAAAGGCGCTCAGATCGATGGTGAAAATATTGACTATGTTTTTGACTTA
    AGTGAATTTTTCGCTACAGATGATAAAGGGAAATTTATTCATGAGCATGATGTCAGAAAT
    TGGTTAGATACTCTATCAAGCAATGAAAAATATCCATTTTCAACCAAAGAACTCCGTAAT
    GAACTCAAGCATACTTTTTGGCTTTTAGAACGTGTCGCTTCGGCCAAAGCATTAAAAGCC
    CTACTAGAAGAACACCCAATCTATGAAAACTATGAGATCGTTCTAGCTGCTGGTGACGGA
    CGTATGTCCGAAGAAGACGATAAAGTCAAACTCAAATCCTTGGACTTGGTTAGAAAAGCG
    ATAGCAGAGAATGACAAAACCATTACCCTATCCGTTGGTCAGCTGACGACAGGTGTCACT
    ATCCCTGAATGGACAGGTGTATTGATGTTATCAAATTTGAAATCACCAGCTCTTTATATG
    CAGGCCGCCTTCCGTGCTCAAAATCCTTACTCATGGAGCGATAACAAAGGAAATCACTTT
    CGCAAAGAAAGAGCCTATGTATTTGACTTTGCGCCGGAAAGAACCTTGATTCTCTTTGAT
    GAGTTTGCCAACAACTTATCGCTTGTAACTGCAGCTGGTAGAGGAACTTCAGCTACACGC
    GAAGAAAATATTAGAGAATTATTAAACTTCTTTCCAATTATTGCCGAAGACCGTGCTGGT
    AAGATGGTTGAAATTGATGCAAAGGCAGTTCTAACCACTCCTCGCCAGATAAAAGCTAGA
    GAAGTTCTTAAACGAGGTTTTATGTCCAATCTCTTATTTGATAATATTAGTGGTATTTTC
    CAAGCAAGTCAAACAGTTTTAGATATTTTAAATGAGCTGCCAGTTGAAAAGGAAGGGAAG
    GTACAAGATAGTTCTGATTTATTAGATTTTTCAGATGTTACAGTCGATGATGAGGGAAAT
    GCAGTAGTAGACCATGAAATTGTAGTTAATCAGCAAATGCGACTTTTTGGTGAAAAAGTT
    TATGGACTTGGTGAATCTGTTGCTGAGTTAGTCACAAAAGATGAGGAACGAACTCAAAAA
    CAGCTGGTCAATGACTTGAGTAAGACCGTTTCTTCAGTGATTGTAGAGGAATTGAAAGCA
    GATTATTCTCTAAAAACAAGGGAAACTGAGCAAATTAAGAAACAAATTACAGCAACACTT
    GAGAATGAAATTCGAAAAAATGATATCGAAAGAAAAATTTCTGAAGCTCATATCAAGCAA
    GAGTTGCAACAGCAGCTCAAAGAAGCAAATGATAAAGCGCAAAAAGATAAGATTCAAGAA
    GATTTGGAAAAACGTTTAGAAGAAAATAAACTCATTCATAAAGAAAAACTAGAACAAACA
    CTCAAAAAAGAAGTGGAAAAAATGCCTGAGAAATTTATCGAACAGGTTGAGATAAAACGT
    GTGGAACAGTTGAAACAATCAGCTCAAGATGAAATTCGTGACCATTTACGAGGGTTTGCA
    AGAACAATTCCAAGTTTTATTATGGCTTACGGTGATCAAACTCTAACACTTGATAATTTT
    GATGCCTTTGTTCCTGAACATGTTTTTTATGAAGTAACAGGGATTACGATTGATCAGTTT
    AGATATTTGCGAGATGGTGGGCAGGATTTTGCAGGGCATCTCTTTGATAAAGCAACATTT
    GACGAAGCTATTCAAGAATTTCTTCGCAAGAAAAAGGAGTTGGCGGATTATTTTAAAGAT
    CAAAAAGAAGACATTTTTGACTATATTCCACCGCAGAAGACCAACCAAATTTTCACTCCT
    AAACGAGTGGTGAAAAGGATGGTAGATGATTTGGAAAAGGAAAATCCAGGGATTTTTGAT
    GATCCATCTAAGACTTTTATTGATTTATATATGAAGTCAGGCCTCTATATTGCAGAACTT
    GTGAAGCGGTTATATAATAGCAATGGCTTGAAAGAGGCCTTTCCAAATCCTGAAGAACGC
    TTAAAACATATTTTGGAAAAGCAAGTTTATGGATTTGCTCCGTCTGAGATTATCTATAAC
    ATTTCCACTAATTTTATATTTGGCAATCTTTCTAAAGATATCAGTAGGAAGAATTTTGTT
    TTAGCAGATACCATTCCAGCGGCTAAAGAAGGGAGCATTCAAAAGTTGGTTGATTCCTAT
    TTTGAAAATAATTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1680
    1740
    1800
    1860
    1920
    1980
    2040
    2100
    2160
    2220
    2280
    2340
    2400
    2460
    2520
    2580
    2640
    2700
    2760
    2820
    2880
    2940
    3000
    3060
    3120
    3180
    3240
    3255

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: EL277_RS06010 [old locus tag: SPNU_1143 ]
  • symbol: EL277_RS06010
  • description: DEAD/DEAH box helicase family protein
  • length: 1084
  • theoretical pI: 5.02099
  • theoretical MW: 125109
  • GRAVY: -0.58893

⊟Function[edit | edit source]

  • TIGRFAM:
    Genetic information processing Protein synthesis Ribosomal proteins: synthesis and modification ribosomal protein uS13 (TIGR03631; HMM-score: 8.1)
  • TheSEED: data available for D39, TIGR4
  • PFAM:
    P-loop_NTPase (CL0023) ResIII; Type III restriction enzyme, res subunit (PF04851; HMM-score: 42.1)
    and 7 more
    no clan defined MIC19_MIC25; MICOS complex subunit MIC19/MIC25 (PF05300; HMM-score: 17.6)
    GIY-YIG (CL0418) T5orf172; T5orf172 domain (PF10544; HMM-score: 17.1)
    no clan defined DUF3614; Protein of unknown function (DUF3614) (PF12267; HMM-score: 13.6)
    P-loop_NTPase (CL0023) SNF2-rel_dom; SNF2-related domain (PF00176; HMM-score: 13.1)
    RdRP (CL0027) RdRP_4; Viral RNA-directed RNA-polymerase (PF02123; HMM-score: 10.4)
    no clan defined MutS_III; MutS domain III (PF05192; HMM-score: 9.1)
    MIEAP; Mitochondria-eating protein (PF16026; HMM-score: 8.7)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.6656
    • Cytoplasmic Membrane Score: 0.0571
    • Cell wall & surface Score: 0.0311
    • Extracellular Score: 0.2462
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.012377
    • TAT(Tat/SPI): 0.000665
    • LIPO(Sec/SPII): 0.001135
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: WP_001143843 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MPVEIKTTKEIHPKIYAYTTPTVTSNEGWIKIGYTERDVTQRIKEQTHTAHIATDVLWTGDAAYTEEPDKGKTFKDHDFHHFLSFHDVERRPKTEWFYFNGTPEKSKNLFDKFVQHDLSGYQPGKGQDYTLRQEQEEAVAKTLAYFQEHAGGKFLWNAKPRFGKTLSTYDLARRMEAVNVLIVTNRPAIANSWYDDFETFIAGQTTYKFVSESDSLKSRPILSRQEFLGILADDVRQLAFISLQDLKGSVYLGGEHDKLKWVTDLHWDLLVIDEAHEGVDTFKTDQAFNKIRRNFTLHLSGTSFKALAKGDFTEEQIYNWSYADEQAAKYSWSLEQEEENPYESLPQLNLFTYQMSQMIGEKLEKGAQIDGENIDYVFDLSEFFATDDKGKFIHEHDVRNWLDTLSSNEKYPFSTKELRNELKHTFWLLERVASAKALKALLEEHPIYENYEIVLAAGDGRMSEEDDKVKLKSLDLVRKAIAENDKTITLSVGQLTTGVTIPEWTGVLMLSNLKSPALYMQAAFRAQNPYSWSDNKGNHFRKERAYVFDFAPERTLILFDEFANNLSLVTAAGRGTSATREENIRELLNFFPIIAEDRAGKMVEIDAKAVLTTPRQIKAREVLKRGFMSNLLFDNISGIFQASQTVLDILNELPVEKEGKVQDSSDLLDFSDVTVDDEGNAVVDHEIVVNQQMRLFGEKVYGLGESVAELVTKDEERTQKQLVNDLSKTVSSVIVEELKADYSLKTRETEQIKKQITATLENEIRKNDIERKISEAHIKQELQQQLKEANDKAQKDKIQEDLEKRLEENKLIHKEKLEQTLKKEVEKMPEKFIEQVEIKRVEQLKQSAQDEIRDHLRGFARTIPSFIMAYGDQTLTLDNFDAFVPEHVFYEVTGITIDQFRYLRDGGQDFAGHLFDKATFDEAIQEFLRKKKELADYFKDQKEDIFDYIPPQKTNQIFTPKRVVKRMVDDLEKENPGIFDDPSKTFIDLYMKSGLYIAELVKRLYNSNGLKEAFPNPEERLKHILEKQVYGFAPSEIIYNISTNFIFGNLSKDISRKNFVLADTIPAAKEGSIQKLVDSYFENN

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription[edit | edit source]

  • transcription start site:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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