PangenomeTIGR4

serotype 4

D39

serotype 2

D39V

serotype 2

Hungary19A-6

serotype 19A

EF3030

serotype 19F

670-6B

serotype 6B

6A-10

serotype 6A

70585

serotype 5

A026

serotype 19F

A66

serotype 3

AP200

serotype 11A

ASP0581

serotype 12F

ATCC 49619

serotype 19F

ATCC 700669

serotype 23F

BM6001

serotype 19F

BVJ1JL

serotype 1

CGSP14

serotype 14

G54

serotype 19F

HU-OH

serotype 3

Hu15

serotype 19A

Hu17

serotype 19A

INV104

serotype 1

INV200

serotype 14

JJA

serotype 14

MDRSPN001

serotype 19F

NCTC7465

serotype 1

NCTC7466

serotype 2

NU83127

serotype 4

OXC141

serotype 3

P1031

serotype 1

R6

serotype 2

SP49

serotype 19A

SPN032672

serotype 1

SPN034156

serotype 3

SPN034183

serotype 3

SPN994038

serotype 3

SPN994039

serotype 3

SPNA45

serotype 3

ST556

serotype 19F

TCH8431/19A

serotype 19A

Taiwan19F-14

serotype 19F

Xen35

serotype 4

gamPNI0373

serotype 1

⊟Summary

• pan ID^?: PNEUPAN002488000
• symbol^?: uvrB
• synonym:
• description^?: excinuclease ABC subunit UvrB

  descriptions from strain specific annotations:

  • excinuclease ABC subunit UvrB
  • excinuclease ABC subunit B
  • excinuclease ABC, B subunit
  • UvrABC system protein B (UvrB protein)
  • UvrABC system protein B
  • excinuclease ABC, subunit B
  • Exonuclease ABC - subunit B
  • Helicase subunit of the DNA excision repair complex
  • pseudogene
• strand^?: -
• coordinates^?: 3181440..3183428
• occurrence^?: in 100% of 43 strains

⊟Orthologs

(4)^?
TIGR4:
SP_RS06070 (uvrB)
(2)
D39:
SPD_RS05865 (uvrB)
(2)
D39V:
SPV_RS05855 (uvrB)
(19A)
Hungary19A-6:
SPH_RS06555 (uvrB)
(19F)
EF3030:
EF3030_RS05260 (uvrB)
(6B)^?
670-6B:
SP670_RS05145 (uvrB)
(6A)
6A-10:
HKM25_RS05815 (uvrB)
(5)
70585:
SP70585_RS06470 (uvrB)
(19F)
A026:
T308_RS04630 (uvrB)
(3)
A66:
A66_RS05600 (uvrB)
(11A)
AP200:
SPAP_RS06245 (uvrB)
(12F)
ASP0581:
EL334_RS06410 (uvrB)
(19F)
ATCC 49619:
EL263_RS06050 (uvrB)
(23F)
ATCC 700669:
SPN23F_RS05750 (uvrB)
(19F)
BM6001:
ODS73_RS06480 (uvrB)
(1)
BVJ1JL:
JN057_RS06175 (uvrB)
(14)
CGSP14:
SPCG_RS05515 (uvrB)
(19F)
G54:
SPG_RS05690 (uvrB)
(1)
gamPNI0373:
HMPREF1038_RS06110 (uvrB)
(3)
HU-OH:
EL271_RS06220 (uvrB)
(19A)
Hu15:
SPNHU15_RS06020 (uvrB)
(19A)
Hu17:
SPNHU17_RS05945 (uvrB)
(1)
INV104:
INV104_RS06140 (uvrB)
(14)
INV200:
SPNINV200_RS05350 (uvrB)
(14)
JJA:
SPJ_RS05735 (uvrB)
(19F)
MDRSPN001:
MDRSPN_RS04225 (uvrB)
(1)
NCTC7465:
AT689_RS07735 (uvrB)
(2)
NCTC7466:
DQM66_RS05865 (uvrB)
(4)
NU83127:
EL277_RS06095 (uvrB)
(3)
OXC141:
SPNOXC_RS05975 (uvrB)
(1)
P1031:
SPP_RS06315 (uvrB)
(2)
R6:
SPR_RS05580 (uvrB)
(19A)
SP49:
BMJ42_RS06530 (uvrB)
(1)
SPN032672:
SPN032672_RS01010 (uvrB)
(3)
SPN034156:
SPN034156_RS01030 (uvrB)
(3)
SPN034183:
SPN034183_RS05990 (uvrB)
(3)
SPN994038:
SPN994038_RS05895 (uvrB)
(3)
SPN994039:
SPN994039_RS05900 (uvrB)
(3)
SPNA45:
SPNA45_RS05355 (uvrB)
(19F)
ST556:
MYY_RS05105 (uvrB)
(19F)
Taiwan19F-14:
SPT_RS04890 (uvrB)
(19A)
TCH8431/19A:
HMPREF0837_RS06055 (uvrB)
(4)
Xen35:
CXP32_RS06135 (uvrB)

⊟Genome Viewer

TIGR4
D39
D39V
Hungary19A-6
EF3030

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
  
  
  TIGR4           MINHITDNQFKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISK
  D39             MINHITDNQFKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISK
  D39V            MINHITDNQFKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISK
  Hungary19A-6    MINHITDNQFKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISK
  EF3030          MINHITDNQFKLVSKYQPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVISK
                  ************************************************************
  
  TIGR4           VNKPTLVIAHNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
  D39             VNKPTLVIAHNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
  D39V            VNKPTLVIAHNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
  Hungary19A-6    VNKPTLVIAHNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
  EF3030          VNKPTLVIAHNKTLAGQLYGEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSV
                  ************************************************************
  
  TIGR4           NDEIDKLRHSATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGLEISRDKLLND
  D39             NDEIDKLRHSATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGLEISRDKLLND
  D39V            NDEIDKLRHSATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGLEISRDKLLND
  Hungary19A-6    NDEIDKLRHSATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGLEISRDKLLND
  EF3030          NDEIDKLRHSATSALLERNDVIVVASVSCIYGLGSPKEYADSVVSLRPGLEISRDKLLND
                  ************************************************************
  
  TIGR4           LVDIQFERNDIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVL
  D39             LVDIQFERNDIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVL
  D39V            LVDIQFERNDIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVL
  Hungary19A-6    LVDIQFERNDIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVL
  EF3030          LVDIQFERNDIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVL
                  ************************************************************
  
  TIGR4           GEVDHLAIFPATHFVTNDDHMEVAIAKIQAELEEQLAVFEKEGKLLEAQRLKQRTEYDIE
  D39             GEVDHLAIFPATHFVTNDDHMEVAIAKIQAELEEQLAVFEKEGKLLEAQRLKQRTEYDIE
  D39V            GEVDHLAIFPATHFVTNDDHMEVAIAKIQAELEEQLAVFEKEGKLLEAQRLKQRTEYDIE
  Hungary19A-6    GEVDHLAIFPATHFVTNDDHMEVAIAKIQAELEEQLAVFEKEGKLLEAQRLKQRTEYDIE
  EF3030          GEVDHLAIFPATHFVTNDDHMEVAVAKIQAELEEQLAVFEKEGKLLEAQRLKQRTEYDIE
                  ************************:***********************************
  
  TIGR4           MLREMGYTNGVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTIGQIKGMYNGDR
  D39             MLREMGYTNGVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIKGMYNGDR
  D39V            MLREMGYTNGVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIKGMYNGDR
  Hungary19A-6    MLREMGYTNGVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTIGQIKGMYNGDR
  EF3030          MLREMGYTNGVENYSRHMDGRSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIKGMYNGDR
                  ************************************************:***********
  
  TIGR4           SRKEMLVNYGFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTETVIEQIIRPT
  D39             SRKEMLVNYGFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTETVIEQIIRPT
  D39V            SRKEMLVNYGFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTETVIEQIIRPT
  Hungary19A-6    SRKEMLVNYGFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTETVIEQIIRPT
  EF3030          SRKEMLVNYGFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYENEQTETVIEQIIRPT
                  ************************************************************
  
  TIGR4           GLLDPEVEVRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYM
  D39             GLLDPEVEVRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYM
  D39V            GLLDPEVEVRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYM
  Hungary19A-6    GLLDPEVEVRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYM
  EF3030          GLLDPEVEVRPTMGQIDDLLGEINARVEKNERTFITTLTKKMAEDLTDYFKEMGIKVKYM
                  ************************************************************
  
  TIGR4           HSDIKTLERTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLI
  D39             HSDIKTLERTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLI
  D39V            HSDIKTLERTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLI
  Hungary19A-6    HSDIKTLERTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLI
  EF3030          HSDIKTLERTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLI
                  ************************************************************
  
  TIGR4           QTIGRAARNSEGHVIMYADTVTQSMQRAIDETARRRKIQMAYNEEHGIVPQTIKKEIRDL
  D39             QTIGRAARNSEGHVIMYADTVTQSMQRAIDETARRRKIQMAYNEEHGIVPQTIKKEIRDL
  D39V            QTIGRAARNSEGHVIMYADTVTQSMQRAIDETARRRKIQMAYNEEHGIVPQTIKKEIRDL
  Hungary19A-6    QTIGRAARNSEGHVIMYADTVTQSMQRAIDETARRRKIQMAYNEEHGIVPQTIKKEIRDL
  EF3030          QTIGRAARNSEGHVIMYADTVTQSMQRAIDETARRRKIQMAYNEEHGIVPQTIKKEIRDL
                  ************************************************************
  
  TIGR4           IAVTKAVAKEEDKEVDINSLNKQERKELVKKLEKQMQEAVEVLDFELAAQIRDMMLEVKA
  D39             IAVTKAVAKEEDKEVDINSLNKQERKELVKKLEKQMQEAVEVLDFELAAQIRDMMLEVKA
  D39V            IAVTKAVAKEEDKEVDINSLNKQERKELVKKLEKQMQEAVEVLDFELAAQIRDMMLEVKA
  Hungary19A-6    IAVTKAVAKEEDKEVDITSLNKQERKELVKKLEKQMQEAVEVLDFELAAQIRDMMLEVKA
  EF3030          IAVTKAVAKEEDKEVDINSLNKQERKELVKKLEKQMQEAVEVLDFELAAQIRDMMLEVKA
                  *****************.******************************************
  
  TIGR4           LD
  D39             LD
  D39V            LD
  Hungary19A-6    LD
  EF3030          LD
                  **