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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
⊟Summary[edit | edit source]
- pan ID?: PNEUPAN002490000
- symbol?: xseB
- synonym:
- description?: exodeoxyribonuclease VII small subunit
- exodeoxyribonuclease VII small subunit
- exodeoxyribonuclease VII, small subunit
- putative exodeoxyribonuclease VII small subunit
- exodeoxyribonuclease 7 small subunit
- conserved domain protein
- Exodeoxyribonuclease small subunit
- Exonuclease VII small subunit
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 3060337..3060549
- occurrence?: in 100% of 41 strains
⊟Orthologs[edit | edit source]
⊟Genome Viewer[edit | edit source]
| TIGR4 | |
| D39 | |
| D39V | |
| Hungary19A-6 | |
| EF3030 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
TIGR4 MTIDISEESLAKESADLLKILLKDRTTKKSIVWATHSYELLGKGFAPSDRINPSKVTGNF
D39 MTIDISEESLAKESADLLKILLKDRTTKKSIVWATHSYELLGKGFAPSDRINPSKVTGNF
D39V MTIDISEESLAKESADLLKILLKDRTTKKSIVWATHSYELLGKGFAPSDRINPSKVTGNF
************************************************************
TIGR4 ANLIQPRSEKSKYEQKDRTKIRAEVFTPTWLVAKQNGYVESKLGSLSLEEYVDLRWLEVT
D39 ANLIQPRSEKSKYEQKDRTKIRAEVFTPTWLVAKQNGYVESKLGSLSLEEYVDLRWLEVT
D39V ANLIQPRSEKSKYEQKDRTKIRAEVFTPTWLVAKQNGYVESKLGSLSLEEYVDLRWLEVT
************************************************************
TIGR4 CGEAPYMVTRYDTVTGEEIPLSERVGFVDRKLQRISREVSDEVTFYKLVKDAYHASYGYE
D39 CGEAPYMVTRYDTVTGEEIPLSERVGFVDRKLQRISREVSDEVTFYKLVKDAYHASYGYE
D39V CGEAPYMVTRYDTVTGEEIPLSERVGFVDRKLQRISREVSDEVTFYKLVKDAYHASYGYE
************************************************************
TIGR4 YQGDSLLLARENLLATFEDYYLAKTGNQPTLEQKKEIATIISYNVFQMDGLKKSSPYSAK
D39 YQGDSLLLARENLLATFEDYYLAKTGNQPTLEQKKEIATIISYNVFQMDGLKKSSPYSAK
D39V YQGDSLLLARENLLATFEDYYLAKTGNQPTLEQKKEIATIISYNVFQMDGLKKSSPYSAK
************************************************************
TIGR4 QKQSQQLSLFADELEVQEVEESKTHIKDWKKNRMIGFERLSSEESEMKFDVVIGNPPYQE
D39 QKQSQQLSLFADELEVQEVEESKTHIKDWKKNRMIGFERLSSEESEMKFDVVIGNPPYQE
D39V QKQSQQLSLFADELEVQEVEESKTHIKDWKKNRMIGFERLSSEESEMKFDVVIGNPPYQE
************************************************************
TIGR4 TGEARDEPIYHYFIDEAYKIADKSILITPARFLFKAGQTPKNWMEKMLEDKHLKVQFYEL
D39 TGEARDEPIYHYFIDEAYKIADKSILITPARFLFKAGQTPKNWMEKMLEDKHLKVQFYEL
D39V TGEARDEPIYHYFIDEAYKIADKSILITPARFLFKAGQTPKNWMEKMLEDKHLKVQFYEL
************************************************************
TIGR4 KSGKVFTGTDIKGGVAITYRDVDKDLGPIGVFTIFETLNGIVKKIEKHPEFETFSDLVYP
D39 KSGKVFTGTDIKGGVAITYRDVDKDLGPIGVFTIFETLNGIVKKIEKHPEFETFSDLVYP
D39V KSGKVFTGTDIKGGVAITYRDVDKDLGPIGVFTIFETLNGIVKKIEKHPEFETFSDLVYP
************************************************************
TIGR4 QGIYRFSNKLFSDYPNAEKLQGKGTKNKIVSKSLTQLDFVFKNNEEKDHVALLGRIGSER
D39 QGIYRFSNKLFSDYPNAEKLQGKGTKNKIVSKSLTQLDFVFKNNEEKDHVALLGRIGSER
D39V QGIYRFSNKLFSDYPNAEKLQGKGTKNKIVSKSLTQLDFVFKNNEEKDHVALLGRIGSER
************************************************************
TIGR4 VYRYINKKYLDLPETFENYNVFVPEANGSGALGEVLSTPLIGEPLIGHTDTFLSIGNFKT
D39 VYRYINKKYLDLPETFENYNVFVPEANGSGALGEVLSTPLIGEPLIGHTDTFLSIGNFKT
D39V VYRYINKKYLDLPETFENYNVFVPEANGSGALGEVLSTPLIGEPLIGHTDTFLSIGNFKT
************************************************************
TIGR4 KFEADACIKFIKTKFARVLLGVLKVTQHNSRKTWYYVPLQDFTVNSDIDWTQSVTDIDRQ
D39 KFEADACIKFIKTKFARVLLGVLKVTQHNSRKTWYYVPLQDFTVNSDIDWTQSVTDIDRQ
D39V KFEADACIKFIKTKFARVLLGVLKVTQHNSRKTWYYVPLQDFTVNSDIDWTQSVTDIDRQ
************************************************************
TIGR4 LDQKYDLSPEEIAFIENHVREMD
D39 LDQKYDLSPEEIAFIENHVREMD
D39V LDQKYDLSPEEIAFIENHVREMD
***********************