PangenomeTIGR4

serotype 4

D39

serotype 2

D39V

serotype 2

Hungary19A-6

serotype 19A

EF3030

serotype 19F

670-6B

serotype 6B

6A-10

serotype 6A

70585

serotype 5

A026

serotype 19F

A66

serotype 3

AP200

serotype 11A

ASP0581

serotype 12F

ATCC 49619

serotype 19F

ATCC 700669

serotype 23F

BM6001

serotype 19F

BVJ1JL

serotype 1

CGSP14

serotype 14

G54

serotype 19F

HU-OH

serotype 3

Hu15

serotype 19A

Hu17

serotype 19A

INV104

serotype 1

INV200

serotype 14

JJA

serotype 14

MDRSPN001

serotype 19F

NCTC7465

serotype 1

NCTC7466

serotype 2

NU83127

serotype 4

OXC141

serotype 3

P1031

serotype 1

R6

serotype 2

SP49

serotype 19A

SPN032672

serotype 1

SPN034156

serotype 3

SPN034183

serotype 3

SPN994038

serotype 3

SPN994039

serotype 3

SPNA45

serotype 3

ST556

serotype 19F

TCH8431/19A

serotype 19A

Taiwan19F-14

serotype 19F

Xen35

serotype 4

gamPNI0373

serotype 1

⊟Summary

• pan ID^?: PNEUPAN002501000
• symbol^?: smc
• synonym:
• description^?: chromosome segregation protein SMC

  descriptions from strain specific annotations:

  • chromosome segregation protein SMC
  • putative chromosome partition protein
  • chromosome partition protein Smc
  • chromosome condensation and segregation SMC protein
  • Chromosome segregation ATPase
  • chromosome segregation protein smc, putative
  • conserved hypothetical protein
• strand^?: -
• coordinates^?: 3202733..3206272
• occurrence^?: in 100% of 43 strains

⊟Orthologs

(4)^?
TIGR4:
SP_RS06110 (smc)
(2)
D39:
SPD_RS05905 (smc)
(2)
D39V:
SPV_RS05895 (smc)
(19A)
Hungary19A-6:
SPH_RS06600 (smc)
(19F)
EF3030:
EF3030_RS05215 (smc)
(6B)^?
670-6B:
SP670_RS05085 (smc)
(6A)
6A-10:
HKM25_RS05855 (smc)
(5)
70585:
SP70585_RS06510 (smc)
(19F)
A026:
T308_RS04590 (smc)
(3)
A66:
A66_RS05670 (smc)
(11A)
AP200:
SPAP_RS06285 (smc)
(12F)
ASP0581:
EL334_RS06450 (smc)
(19F)
ATCC 49619:
EL263_RS06090 (smc)
(23F)
ATCC 700669:
SPN23F_RS05790 (smc)
(19F)
BM6001:
ODS73_RS06520 (smc)
(1)
BVJ1JL:
JN057_RS06215 (smc)
(14)
CGSP14:
SPCG_RS05475 (smc)
(19F)
G54:
SPG_RS05730 (smc)
(1)
gamPNI0373:
HMPREF1038_RS06150 (smc)
(3)
HU-OH:
EL271_RS06260 (smc)
(19A)
Hu15:
SPNHU15_RS06060 (smc)
(19A)
Hu17:
SPNHU17_RS05985 (smc)
(1)
INV104:
INV104_RS06180 (smc)
(14)
INV200:
SPNINV200_RS05310 (smc)
(14)
JJA:
SPJ_RS05775 (smc)
(19F)
MDRSPN001:
MDRSPN_RS04185 (smc)
(1)
NCTC7465:
AT689_RS07695 (smc)
(2)
NCTC7466:
DQM66_RS05905 (smc)
(4)
NU83127:
EL277_RS06135 (smc)
(3)
OXC141:
SPNOXC_RS06015 (smc)
(1)
P1031:
SPP_RS06355 (smc)
(2)
R6:
SPR_RS05620 (smc)
(19A)
SP49:
BMJ42_RS06570 (smc)
(1)
SPN032672:
SPN032672_RS01050 (smc)
(3)
SPN034156:
SPN034156_RS01070 (smc)
(3)
SPN034183:
SPN034183_RS06030 (smc)
(3)
SPN994038:
SPN994038_RS05935 (smc)
(3)
SPN994039:
SPN994039_RS05940 (smc)
(3)
SPNA45:
SPNA45_RS05280 (smc)
(19F)
ST556:
MYY_RS05065 (smc)
(19F)
Taiwan19F-14:
SPT_RS04850 (smc)
(19A)
TCH8431/19A:
HMPREF0837_RS06015 (smc)
(4)
Xen35:
CXP32_RS06175 (smc)

⊟Genome Viewer

TIGR4
D39
D39V
Hungary19A-6
EF3030

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
  
  
  TIGR4           MYLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK
  D39             MYLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK
  D39V            MYLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK
  Hungary19A-6    MYLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK
  EF3030          MYLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK
                  ************************************************************
  
  TIGR4           MPDIIFAGTESRKPLNYASVVVTLDNHDGFIKDAGQEIRVERHVYRSGDSEYKIDGKKVR
  D39             MPDVIFAGTESRKPLNYASVVVTLDNHDGFIKDAGQEIRVERHIYRSGDSEYKIDGKKVR
  D39V            MPDVIFAGTESRKPLNYASVVVTLDNHDGFIKDAGQEIRVERHIYRSGDSEYKIDGKKVR
  Hungary19A-6    MPDVIFAGTESRKPLNYASVVVTLDNHDGFIKDAGQEIRVERHIYRSGDSEYKIDGKKVR
  EF3030          MPDVIFAGTESRKPLNYASVVVTLDNHDGFIKDAGQEIRVERHIYRSGDSEYKIDGKKVR
                  ***:***************************************:****************
  
  TIGR4           LRDIHDLFLDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLKYKTRRKETESK
  D39             LRDIHDLFLDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLKYKTRRKETESK
  D39V            LRDIHDLFLDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLKYKTRRKETESK
  Hungary19A-6    LRDIHDLFLDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLKYKTRRKETESK
  EF3030          LRDIHDLFLDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLKYKTRRKETESK
                  ************************************************************
  
  TIGR4           LQQTQDNLDRLEDIIYELDNQIKPLEKQAENARKFLDLEGQRKAIYLDVLVAQIKENKAE
  D39             LQQTQDNLDRLEDIIYELDNQIKPLEKQAENARKFLDLEGQRKVIYLDVLVAQIKENKAE
  D39V            LQQTQDNLDRLEDIIYELDNQIKPLEKQAENARKFLDLEGQRKVIYLDVLVAQIKENKAE
  Hungary19A-6    LQQTQDNLDRLEDIIYELDNQIKPLEKQAENACKFLDLEGQRKAIYLDVLVAQIKENKAE
  EF3030          LQQTQDNLDRLEDIIYELDNQIKPLEKQAENARKFLDLEGQRKAIYLDVLVAQIKENKAE
                  ******************************** **********.****************
  
  TIGR4           LESTEEELTQVQELLMSYYQKREKLEEENQTLKKQRQDLQAEMAKDQGSLMDLTSLISDL
  D39             LESTEEELAQVQELLMSYYQKREKLEEENQTLKKQRQDLQAEMAKDQGSLMDLTSLISDL
  D39V            LESTEEELAQVQELLMSYYQKREKLEEENQTLKKQRQDLQAEMAKDQGSLMDLTSLISDL
  Hungary19A-6    LESTEEELAQVQELLMSYYQKREKLEEENQTLKKQRQDLQAEMAKDQGSLMDLTSLISDL
  EF3030          LESTEEELAQVQELLMSYYQKREKLEEENQTLKKQRQDLQAEMAKDQGSLMDLTSLISDL
                  ********:***************************************************
  
  TIGR4           ERKLALSKLESEQVALNQQEAQARLAALEDKRNSLSKEKSDKESSLALLEGNLVQNNQKL
  D39             ERKLALSKLESEQVALNQQEAQARLAALEDKRNSLSKEKYDKESSLALLEGNLVQNNQKL
  D39V            ERKLALSKLESEQVALNQQEAQARLAALEDKRNSLSKEKYDKESSLALLEGNLVQNNQKL
  Hungary19A-6    ERKLALSKLESEQVALNQQEAQARLAALEDKRNSLSKEKSDKESSLALLEGNLVQNNQKL
  EF3030          ERKLALSKLESEQVALNQQEAQARLAALEDKRNSLSKEKSDKESSLALLEGNLVQNNQKL
                  *************************************** ********************
  
  TIGR4           NRLEAELLAFSDDPDQMIELLRERFVALLQEEADVSNQLTRIENELENSRQLSQKQADQL
  D39             NRLEAELLAFSDDPDQMIELLRERFVALLQEEADVSNQLTRIENELENSRQLSQKQADQL
  D39V            NRLEAELLAFSDDPDQMIELLRERFVALLQEEADVSNQLTRIENELENSRQLSQKQADQL
  Hungary19A-6    NRLEAELLAFSDDPDQMIELLRERFVALLQEEADVSNQLTRIENELENSRQLSQKQADQL
  EF3030          NRLEAELLAFSDDPDQMIELLRERFVALLQEEADVSNQLTRIENELENSRQLSQKQADQL
                  ************************************************************
  
  TIGR4           EKLKEQLAIAKEKASQQKEELETAKEQVQKLLADYQAIAKEQEEQKTSYQAQQSQLFDRL
  D39             EKLKEQLATAKEKASQQKDELETAKVQVQKLLADYQAIAKEQEEQKTSYQAQQSQLFDRL
  D39V            EKLKEQLATAKEKASQQKDELETAKVQVQKLLADYQAIAKEQEEQKTSYQAQQSQLFDRL
  Hungary19A-6    EKLKEQLAIAKEKASQQKEELETAKEQVQKLLADYQAIAKEQEEQKTSYQAQQSQLFDRL
  EF3030          EKLKEQLAIAKEKASQQKEELETAKEQVQKLLADYQAIAKEQEEQKTSYQAQQSQLFDRL
                  ******** *********:****** **********************************
  
  TIGR4           DNLKNKQARAQSLENILRNHSNFYAGVKSVLQEKDRLGGIIGAVSEHLTFDVYYQTALEI
  D39             DSLKNKQARAQSLENILRNHSNFYAGVKSVLQEKDRLGGIIGAVSEHLTFDVYYQTALEI
  D39V            DSLKNKQARAQSLENILRNHSNFYAGVKSVLQEKDRLGGIIGAVSEHLTFDVYYQTALEI
  Hungary19A-6    DNLKNKQARAQSLENILRNHSNFYAGVKSVLQEKDRLGGIIGAVSEHLTFDMHYQTALEI
  EF3030          DNLKNKQARAQSLENILRNHSNFYAGVKSVLQEKDRLGGIIGAVSEHLTFDMHYQTALEI
                  *.*************************************************::*******
  
  TIGR4           ALGASSQHIIVEDEESATKAIDFLKRNRAGRATFLPLTTIKARTISSQNQDAIAVSPGFL
  D39             ALGASSQHIIVEDEESATKAIDFLKRNRVGRATFLPLTTIKARTISSQNQDAIAVSPGFL
  D39V            ALGASSQHIIVEDEESATKAIDFLKRNRVGRATFLPLTTIKARTISSQNQDAIAVSPGFL
  Hungary19A-6    ALGASSQHIIVEDENAATKAIDFLKRNRAGRATFLPLTTIKARTISSQNQDAIAVSPGFL
  EF3030          ALGASSQHIIVEDENAATKAIDFLKRNRAGRATFLPLTTIKARTISSQNQDAIAVSPGFL
                  **************::************.*******************************
  
  TIGR4           GMADELVTFDTRLEAIFKNLLATTAIFDTVEHARAAARQVRYQVRMVTLDGTELRTGGSY
  D39             GMADELVTFDTRLEAIFKNLLATTAIFDTVEHAREAARQVRYQVRMVTLDGTELRTGGSY
  D39V            GMADELVTFDTRLEAIFKNLLATTAIFDTVEHAREAARQVRYQVRMVTLDGTELRTGGSY
  Hungary19A-6    GMADELVTFDTRLEAIFKNLLATTAIFDTVEHAREAVRQVRYQVRMVTLDGTELRTGGSY
  EF3030          GMADELVTFDTRLEAIFKNLLATTAIFDTVEHAREAARQVRYQVRMVTLDGTELRTGGSY
                  ********************************** *.***********************
  
  TIGR4           AGGANRQNNSIFIKPELEQLQKEIAEEEASLGSEEATLKTLQDEMARLTESLEAIKSQGE
  D39             AGGANRQNNSIFIKPELEQLQKEIAADEASLGSEEAALKTLQDQMAALTERLEAIKSQGE
  D39V            AGGANRQNNSIFIKPELEQLQKEIAADEASLGSEEAALKTLQDQMAALTERLEAIKSQGE
  Hungary19A-6    AGGANRQNNSIFIKPELEQLQKEIAEEEASLGSEEVALKTLQDEMARLIESLEAIKSQGE
  EF3030          AGGANRQNNSIFIKPELEQLQKEIAEEEASLDSEEVALKTLQDEMARLTESLEAIKSQGE
                  ************************* :****.***.:******:** * * *********
  
  TIGR4           QARIQEQGLFLAYQQTSQQVEELETLWKLQEEEIDRLSEGDWQADKENCQERLAAISSDK
  D39             QARIQEQGLSLAYQQTSQQVEELETLWKLQEEEIDRLSEGDWQADKEKCQESLATIASEK
  D39V            QARIQEQGLSLAYQQTSQQVEELETLWKLQEEEIDRLSEGDWQADKEKCQESLATIASEK
  Hungary19A-6    QARIQEQGLFLAYQQTSQQVEELETLWKLQEEEIDRLSEGDWQADKENCQERLAAIASDK
  EF3030          QARIQEQGLFLAYQQTSQQVEELETLWKLQEKELNRLSDGDWQADKEKCQERLATIASDK
                  ********* *********************:*::***:********:*** **:*:*:*
  
  TIGR4           QNLEAEIEEIKSNKNAIQERYQNLQEELAQARLLKTELQGQKRYEVADIERLGKELDNLD
  D39             QNLEAEIEEIKSNKNAIQERYQNLQEEVAQARLLKTELQGQKRYEVADIERLGKELDNLN
  D39V            QNLEAEIEEIKSNKNAIQERYQNLQEEVAQARLLKTELQGQKRYEVADIERLGKELDNLN
  Hungary19A-6    QNLEAEIEEIKSNKNAIQERYQNLQEELAQARLLKTELQGQKRYEVADIERLGKELDNLN
  EF3030          QNLEAEIEEIKSNKNAIQERYQNLQEELAQARLLKTELQGQKRYEVADIERLGKELDNLN
                  ***************************:*******************************:
  
  TIGR4           FEQEEIQRLLQEKIDNLEKVDTELLSQQAEESKTQKTNLQQGLIRKQFELDDIEGQLDDI
  D39             IEQEEIQRMLQEKVDNLEKVDTELLSQQAEESKTQKTNLQQGLIRKQFELDDIEGQLDDI
  D39V            IEQEEIQRMLQEKVDNLEKVDTELLSQQAEESKTQKTNLQQGLIRKQFELDDIEGQLDDI
  Hungary19A-6    IEQEEIQRMLQEKVDNLEKVDTDLLNQQAEEAKTQKTNLQQGLIRKQFELDDIEGQLDDI
  EF3030          IEQEEIQRMLQEKVDNLEKVDTELLSQQAEESKTQKTNLQQGLIRKQFELDDIEGQLDDI
                  :*******:****:********:**.*****:****************************
  
  TIGR4           ASHLDQARQQNEEWIRKQTRAEAKKEKVSERLRHLQSQLTDQYQISYTEALEKAHELENL
  D39             ASHLDQARQQNEEWIRKQTRAEAKKEKVSERLRHLQNQLTDQYQISYTEALEKAHELENL
  D39V            ASHLDQARQQNEEWIRKQTRAEAKKEKVSERLRHLQNQLTDQYQISYTEALEKAHELENL
  Hungary19A-6    ASHLDQARQQNEEWIRKQTRAEAKKEKVSERLRHLQSQLTDQYQISYTEALEKAHELENL
  EF3030          ASHLDQARQQNEEWIRKQTRAEAKKEKVSERLRHLQSQLTDQYQISYTEALEKAHELENL
                  ************************************.***********************
  
  TIGR4           NLAEQEVKDLEKAIRSLGPVNLDAIEQYEEVHNRLDFLNSQRDDILSAKNLLLETITEMN
  D39             NLAEQEVQDLEKAIRSLGPVNLEAIDQYEEVHNRLDFLNSQRDDILSAKNLLLETITEMN
  D39V            NLAEQEVQDLEKAIRSLGPVNLEAIDQYEEVHNRLDFLNSQRDDILSAKNLLLETITEMN
  Hungary19A-6    NLAEQEVKDLEKAIRSLGPVNIEAIDQYEEVRNRLDFLNSQRDDILSAKNLLLETITEMN
  EF3030          NLAEQEVKDLEKAIRSLGPVNIEAIDQYEEVHNRLDFLNSQRDDILSAKNLLLETITEMN
                  *******:*************::**:*****:****************************
  
  TIGR4           DEVKERFKSTFEVIRESFKVTFKQMFGGGQADLILTEGDLLTAGVEISVQPPGKKIQSLN
  D39             DEVKERFKSTFEAIRESFKVTFKQMFGGGQADLILTEGDLLTAGVEISVQPPGKKIQSLN
  D39V            DEVKERFKSTFEAIRESFKVTFKQMFGGGQADLILTEGDLLTAGVEISVQPPGKKIQSLN
  Hungary19A-6    DEVKERFKSTFEAIRESFKVTFKQMFGGGQADLILTEGDLLTAGVEISVQPPGKKIQSLN
  EF3030          DEVKERFKSTFEAIRESFKVTFKQMFGGGQADLILTEGDLLTAGVEISVQPPGKKIQSLN
                  ************.***********************************************
  
  TIGR4           LMSGGEKALSALALLFSIIRVKTIPFVILDEVEAALDEANVKRFGDYLNRFDKDSQFIVV
  D39             LMSGGEKALSALALLFSIIRVKTIPFVILDEVEAALDEANVKRFGDYLNRFDKDSQFIVV
  D39V            LMSGGEKALSALALLFSIIRVKTIPFVILDEVEAALDEANVKRFGDYLNRFDKDSQFIVV
  Hungary19A-6    LMSGGEKALSALALLFSIIRVKTIPFVILDEVEAALDEANVKRFGDYLNRFDKDSQFIVV
  EF3030          LMSGGEKALSALALLFSIIRVKTIPFVILDEVEAALDEANVKRFGDYLNRFDKDSQFIVV
                  ************************************************************
  
  TIGR4           THRKGTMAAADSIYGVTMQESGVSKIVSVKLKDLESIEG
  D39             THRKGTMAAADSIYGVTMQESGVSKIVSVKLKDLESIEG
  D39V            THRKGTMAAADSIYGVTMQESGVSKIVSVKLKDLESIEG
  Hungary19A-6    THRKGTMAAADSIYGVTMQESGVSKIVSVKLKDLESIEG
  EF3030          THRKGTMAAADSIYGVTMQESGVSKIVSVKLKDLESIEG
                  ***************************************