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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
⊟Summary[edit | edit source]
- pan ID?: PNEUPAN002505000
- symbol?: —
- synonym:
- description?: McrC family protein
- McrC family protein
- putative uncharacterized protein
- conserved hypothetical protein
- 3-isopropylmalate dehydrogenase
- McrBC 5-methylcytosine restriction system component
- conserved domain protein
- mcrBC 5-methylcytosine restriction system component family protein
- pseudogene
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 3208368..3209772
- occurrence?: in 100% of 43 strains
⊟Orthologs[edit | edit source]
⊟Genome Viewer[edit | edit source]
| TIGR4 | |
| D39 | |
| D39V | |
| Hungary19A-6 | |
| EF3030 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
TIGR4 MRITDNQHKIIKEKFVEEYPKLSNPLLDRTLESLSQDERIFIFPNDLTHTPDLDKDQKIF
D39 MRITDNQHKIIKEKFVEEYPKLSNLLLDRTLESLSQDERIFIFPNDLTHTPDLDKDQKIF
D39V MRITDNQHKIIKEKFVEEYPKLSNLLLDRTLESLSQDERIFIFPNDLTHTPDLDKDQKIF
Hungary19A-6 MRITDNQHKIIKEKFVEEYPKLSNPLLDRTLESLSQDERIFIFPNDLTHTPDLDKDQKIF
EF3030 MRITDNQHKIIKEKFVEEYPKLSNPLLDRTLESLSQDERIFIFPNDLTHTPDLDKDQKIF
************************ ***********************************
TIGR4 ETVNQKIKTGNVIGFLGYGQERLTISSRFSDESNDHFLHYLLNKVLHINLTSLDVALSRE
D39 ETVNQKIKTGNVIGFLGYGQERLTISSRFSDESNDHFLHYLLNKVLYINLTSLDVALSRE
D39V ETVNQKIKTGNVIGFLGYGQERLTISSRFSDESNDHFLHYLLNKVLYINLTSLDVALSRE
Hungary19A-6 ETVNQKIKTGNVIGFLGYGQERLTISSRFSDESNDHFLHYLLNKVLHINLTSLDVALSRE
EF3030 ETVNQKIKTGNVIGFLGYGQERLTISSRFSDESNDHFLHYLLNKVLHINLTSLDVALSRE
**********************************************:*************
TIGR4 ERLYQLLVYLFPKYLQAAIRKGLYKEYHRFSHNDSHVKGVIDVRNHLKKNLPFTGNIAYA
D39 ERLYQLLMYLFPKYLQAAIRKGLYKEYHRFSHNDSNVKGVIVVRNHLKKNLPFTGNIAYT
D39V ERLYQLLMYLFPKYLQAAIRKGLYKEYHRFSHNDSNVKGVIVVRNHLKKNLPFTGNIAYT
Hungary19A-6 ERLYQLLMYLFPKYLQAAIRKGLYKEYHRFSHNDSHVKGVIDVRSHLKKNLPFTGNIAYT
EF3030 ERLYQLLMYLFPKYLQAAIRKGLYKEYHRFSHNDSHVKGAIDVRSHLKKNLPFTGNIAYT
*******:***************************:***.* **.**************:
TIGR4 TREFTYDNPLMQLVRHTIEYIKNQKSIGQGVLDNLSTSRENVSEIVRVTPSYKLADRAKI
D39 TREFTYDNPLMQLVRHTIEYIKNQKSIGQGVLDNLSTSRENVSEIVRVTPSYKLADRAKI
D39V TREFTYDNPLMQLVRHTIEYIKNQKSIGQGVLDNLSTSRENVSEIVRVTPSYKLADRAKI
Hungary19A-6 TREFTYDNPLMQLVRHTIEYIENQKSIGQGVLDNLSTSRENVSEIVRVTPSYKLADRAKI
EF3030 TREFTYDNPLMQLVRHTIEYIKNQKSIGQGVLDNLSTSRENVSEIVRVTPSYKLADRAKI
*********************:**************************************
TIGR4 IRGNQSKPIRHAYFHEYRNLQELCLMILNQEKHGLGYQDQKIYGILFDVAWLWEEYVYTL
D39 TRRNQSKPIRHAYFHEYRNLQELCLMILNQEKHGLGYQDQKIYGILFDVAWLWEEYVYTL
D39V TRRNQSKPIRHAYFHEYRNLQELCLMILNQEKHGLGYQDQKIYGILFDVAWLWEEYVYTL
Hungary19A-6 IRGNQSKPIRHAYFHEYRNLQELCLMILNQEKHGLGYQDQKIYGILFDVAWLWEEYVYTL
EF3030 IRGNQSKPIRHAYFHEYRNLQELCLMILNQEKHGLGYQDQKIYGILFDVAWLWEEYVYTL
* *********************************************************
TIGR4 LPKGFVHPRNKDKTDGISVFSVGKRKVYPDFYDRERKIVLDAKYKKLELTEKGINREDLF
D39 LPKGFVHPRNKDKTDGISVFSVGKRKVYPDFYDRERKIVLDAKYKKLELTEKGINREDLF
D39V LPKGFVHPRNKDKTDGISVFSVGKRKVYPDFYDRERKIVLDAKYKKLELTEKGINREDLF
Hungary19A-6 LPKGFVHPRNKDKTDGISVFSVGKRKVYPDFYDRERKIVLDAKYKKLELTEKGINREDLF
EF3030 LPKGFVHPRNKDKTDGISVFSVGKRKVYPDFYDRERKIVLDAKYKKLELTEKGINREDLF
************************************************************
TIGR4 QLISYSYILKAEKAGLIFPSMEQSVNSEIGKVAGYGAQLKKWSIRIPQNASFYSTFCKMM
D39 QLISYSYILKAEKAGLVFPSKDKVIDNEIGNLAGYGALLKKWSIQIPQKSSSYSAFCKMM
D39V QLISYSYILKAEKAGLVFPSKDKVIDNEIGNLAGYGALLKKWSIQIPQKSSSYSAFCKMM
Hungary19A-6 QLISYSYILKAEKAGLIFPSMEQSVNSEIGKVAGYGAQLKKWSIRIPQNASSYSAFCKMM
EF3030 QLISYSYILKAEKAGLIFPSMEQSVNSEIGKVAGYGSQLKKWSIRIPQNASFYSAFCKMM
****************:*** :: ::.***::****: ******:***::* **:*****
TIGR4 ENSEENFKAIIDEEVGRK------------------------
D39 ENSEENFKAIIDEEVGRK------------------------
D39V ENSEENFKAIIDEEVGRK------------------------
Hungary19A-6 ENSEENFKAIIDEEVGRKQFPLFLLFLTQAKPERYILIHKII
EF3030 ENSEENFKAIIDEEVGRK------------------------
******************