Jump to navigation
Jump to search
PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 17-DEC-2024
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae Taiwan19F-14
- locus tag: SPT_RS04830 [old locus tag: SPT_0978 ]
- pan locus tag?: PNEUPAN002505000
- symbol: SPT_RS04830
- pan gene symbol?: —
- synonym:
- product: McrC family protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SPT_RS04830 [old locus tag: SPT_0978 ]
- symbol: SPT_RS04830
- product: McrC family protein
- replicon: chromosome
- strand: +
- coordinates: 920393..921709
- length: 1317
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: NC_012469 (920393..921709) NCBI
- BioCyc: SPT_RS04830 BioCyc
- MicrobesOnline: see SPT_0978
- PneumoBrowse for strain D39V: SPV_1108 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
1141
1201
1261ATGCGGATTACTGATAATCAACACAAGATTATTAAAGAAAAATTTGTTGAAGAATATCCT
AAACTAAGCAATCTCCTTTTAGACAGAACCTTGGAAAGTCTATCCCAAGATGAACGTATT
TTCATTTTTCCAAATGATTTGACTCATACTCCTGATTTGGATAAGGACCAAAAGATTTTT
GAAACAGTCAATCAGAAAATCAAGACAGGGAACGTGATTGGTTTTCTTGGATATGGTCAG
GAAAGATTAACGATTTCCTCACGATTTTCTGATGAGAGTAATGACCATTTTTTGCATTAT
CTCTTAAACAAGGTTCTTTATATCAATCTCACTAGTTTAGATGTTGCTTTGTCTCGTGAA
GAGAGGCTTTATCAACTTTTGATGTATCTCTTCCCCAAGTATCTACAAGCCGCTATTCGA
AAAGGTCTTTATAAGGAATATCATCGATTTTCTCATAACGACAGTCATGTTAAGGGAGTG
ATTGATGTAAGAAACCATCTCAAGAAAAATCTTCCTTTCACGGGAAATATTGCCTACACA
ACGAGAGAGTTCACCTATGATAATCCCCTCATGCAGTTGGTCCGTCACACTATTGAATAC
ATTAAGAATCAGAAAAGCATTGGTCAAGGGGTACTAGATAATCTCTCAACTAGTCGTGAA
AACGTATCTGAAATCGTGCGTGTAACGCCCTCTTATAAACTAGCTGATCGTGCTAAGATT
ATTCGGGGAAATCAATCTAAACCTATACGTCATGCATACTTTCACGAGTACAGAAACTTA
CAAGAACTTTGTCTGATGATCCTAAACCAAGAAAAGCACGGTTTAGGGTATCAAGATCAA
AAAATCTATGGTATTCTCTTTGATGTTGCCTGGCTTTGGGAAGAGTATGTTTACACCTTG
TTGCCAAAAGGTTTTGTACATCCCAGAAATAAGGATAAGACGGATGGAATTTCAGTATTT
TTTGTTGGGAAACGAAAAGTATATCCAGATTTTTATGACAGAGAACGAAAGATTGTTCTA
GATGCAAAATATAAAAAACTGGAATTGACTGAAAAAGGAATCAACCGTGAGGACTTATTC
CAGCTGATTTCCTATTCTTATATTTTAAAAACTGAGAAGGCTGGACTGATTTTTCCTAGT
ATGGAGCAGTCAGTAAATAGTGAAATAGGAAAAGTAGCTGGCTATGGAGCTCAATTGAAG
AAGTGGTCTATTCGAATCCCTCAGAATGCCTCATCCTATAGTGCATTTTGTAAAATGATG
GAAAATTCAGAAGAAAATTTTAAAGCGATTATTGATGAAGAAGTGGGGAGAAAATAA60
120
180
240
300
360
420
480
540
600
660
720
780
840
900
960
1020
1080
1140
1200
1260
1317
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SPT_RS04830 [old locus tag: SPT_0978 ]
- symbol: SPT_RS04830
- description: McrC family protein
- length: 438
- theoretical pI: 9.43886
- theoretical MW: 51418.5
- GRAVY: -0.524201
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED: see SPT_0978
- PFAM: PDDEXK (CL0236) McrBC; McrBC 5-methylcytosine restriction system component (PF10117; HMM-score: 295.9)and 1 moreno clan defined YxiJ; YxiJ-like protein (PF14176; HMM-score: 15.1)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- DeepLocPro: Cytoplasmic
- Cytoplasmic Score: 0.5744
- Cytoplasmic Membrane Score: 0.291
- Cell wall & surface Score: 0.002
- Extracellular Score: 0.1327
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.002463
- TAT(Tat/SPI): 0.000143
- LIPO(Sec/SPII): 0.000376
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: WP_001816429 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MRITDNQHKIIKEKFVEEYPKLSNLLLDRTLESLSQDERIFIFPNDLTHTPDLDKDQKIFETVNQKIKTGNVIGFLGYGQERLTISSRFSDESNDHFLHYLLNKVLYINLTSLDVALSREERLYQLLMYLFPKYLQAAIRKGLYKEYHRFSHNDSHVKGVIDVRNHLKKNLPFTGNIAYTTREFTYDNPLMQLVRHTIEYIKNQKSIGQGVLDNLSTSRENVSEIVRVTPSYKLADRAKIIRGNQSKPIRHAYFHEYRNLQELCLMILNQEKHGLGYQDQKIYGILFDVAWLWEEYVYTLLPKGFVHPRNKDKTDGISVFFVGKRKVYPDFYDRERKIVLDAKYKKLELTEKGINREDLFQLISYSYILKTEKAGLIFPSMEQSVNSEIGKVAGYGAQLKKWSIRIPQNASSYSAFCKMMENSEENFKAIIDEEVGRK
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription[edit | edit source]
- transcription start site:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_1108 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]