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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
⊟Summary[edit | edit source]
- pan ID?: PNEUPAN002506000
- symbol?: mcrB
- synonym:
- description?: McrB family protein
- McrB family protein
- putative endonuclease
- endonuclease
- conserved hypothetical protein
- 5-methylcytosine-specific restriction enzyme B
- endonuclease, putative
- GTPase subunit of restriction endonuclease
- NACHT domain protein
- putative endonuclease, point mutation
- pseudogene
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 3209786..3211725
- occurrence?: in 100% of 43 strains
⊟Orthologs[edit | edit source]
⊟Genome Viewer[edit | edit source]
| TIGR4 | |
| D39 | |
| D39V | |
| Hungary19A-6 | |
| EF3030 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
TIGR4 MNKRKVSLEDFYKWYSLNKEELLNKATVGEKFNDKLKEEFLQEWPLDRILTMSIDEYVIG
D39 MNKRKVSLEDFYKWYSLNKEELLNKATVGEKFNDKLKEEFLQEWPLDRILTMSIDEYVIG
D39V MNKRKVSLEDFYKWYSLNKEELLNKATVGEKFNDKLKEEFLQEWPLDRILTMSIDEYVIG
Hungary19A-6 MNKRKVSLEDFYKWYSLNKEELLNKATVGEKFNDKLKEEFLQEWPLDRILTMSIDEYVIG
EF3030 MNKRKVSLEDFYKWYSLNKEELLNKATVGEKFNDKLKEEFLQEWPLDRILTMSIDEYVIG
************************************************************
TIGR4 KGQQNKSLCYALEKGKYKNLFLGISGGSASKFGIYWNKKTNKYKDQANNEISELDQRFSK
D39 KGQQNKSLCYALEKGKYKNLFLGISGGSASKFGIYWNKKTNKYKDQANNEISELDQRFSK
D39V KGQQNKSLCYALEKGKYKNLFLGISGGSASKFGIYWNKKTNKYKDQANNEISELDQRFSK
Hungary19A-6 KGQQNKSLCYALEKGKYKNLFLGISGGSASKFGIYWNKKTNKYKDQANNEISELDQRFSK
EF3030 KGQQNKSLCYALEKGKYKNLFLGISGSSASKFGIYWNKKTNKYKDQANNEISELDQRFSK
**************************.*********************************
TIGR4 LKSDLYEIIKEGIRFNFENPIFDMKRSTNEFIGRSAMVTKLLCIYTEGDPFFGVNINSQK
D39 LKSDLYEIIKEGIRFNFENPIFDMKRSTNEFIGRSAMVTKLLCIYTEGDPFFGVNINSQK
D39V LKSDLYEIIKEGIRFNFENPIFDMKRSTNEFIGRSAMVTKLLCIYTEGDPFFGVNINSQK
Hungary19A-6 LKSDLYEIIKEGIRFNFENPIFDMKRSTNEFIGRSAMVTKLLCIYTEGDPFFGVNINSQK
EF3030 LKSDLYEIIKEGIRFNFENPIFDMKRSTNEFIGRSAMVTKLLCIYSEGDPFFGVNINSQK
*********************************************:**************
TIGR4 EFWNHFVSQTNQGGPYLQNHKIIELVSKTYPELEPSKLGTMLFEYSKLFMENKEDNSTMD
D39 EFWNHFVSQTNQGGPYLQNHKIIELVSKTYPELEPSKLGTMLFEYSKLFMENKEDNSTMD
D39V EFWNHFVSQTNQGGPYLQNHKIIELVSKTYPELEPSKLGTMLFEYSKLFMENKEDNSTMD
Hungary19A-6 EFWNHFVSQTNQGGPYLQNHKIIELVSKTYPELEPSKLGTMLFEYSKLFMENKEDNSTMD
EF3030 EFWNHFVSQTNQGGPYLQNHKIIELVSKTYPELEPSKLGTMLFEYSKLFMENKEDNSTMD
************************************************************
TIGR4 SSNNFRHQLTQSLLKSPNLILRGAPGTGKTYLAKEIAKELTDGNEDQIGFVQFHPSYDYT
D39 SSNNFSHQLTQSLLKSPNLILRGAPGTGKTYLAKEIAKELTDGNEDQIGFVQFHPSYDYT
D39V SSNNFSHQLTQSLLKSPNLILRGAPGTGKTYLAKEIAKELTDGNEDQIGFVQFHPSYDYT
Hungary19A-6 SSNNFSHQLTQSLLKSPNLILRGAPGTGKTYLAKEIAKELTDGNEDQIGFVQFHPSYDYT
EF3030 SSNNFRHQLTQSLLKSPNLILRGAPGTGKTYLAKEIAKELTDGNEDQIGFVQFHPSYDYT
***** ******************************************************
TIGR4 DFVEGLRPVSNGDGAIEFRLQDGIFKDFCQKAKETQLIGGQDNFDEAWDSYLEYINVAEE
D39 DFVEGLRPVSNGDGAIEFRLQDGIFKDFCQKAKETQLIGGQDNFDEAWDSYLEYINVAEE
D39V DFVEGLRPVSNGDGAIEFRLQDGIFKDFCQKAKETQLIGGQDNFDEAWDSYLEYINVAEE
Hungary19A-6 DFVEGLRPVSNGDGAIEFRLQDGIFKDFCQKAKEPQLIGGQDNFDEAWDSYLEYINVAEE
EF3030 DFVEGLRPDSNEDGSIFFKLKEGIFKKFCQNAIDSKKIGGQDNFDEAWDLYLEYVNNIDE
******** ** **:* *:*::****.***:* :.: ************ ****:* :*
TIGR4 KEYITKTSYLSVNSRQNLSVNYDSGVPGWSLPSKYVYELYKDKNYNKQEYYKSGGKTVLE
D39 KEYITKTSDLSVNSRQNLSVNYDSGVPGWSLPSKYVYELYKDKNYNKQEYYKSGGKTVLE
D39V KEYITKTSDLSVNSRQNLSVNYDSGVPGWSLPSKYVYELYKDKNYNKQEYYKSGGKTVLE
Hungary19A-6 KEYITKTSYLSVNSRQNLSVNYDSGVPGWSLPSKYVYELYKDKNYNKQEYYKSGGKTVLE
EF3030 KEYLTEFSYLTVNSRNNFNINYETKAKGTVLTKSYVYELYKDENYLKQPYYHNQGKKVLE
***:*: * *:****:*:.:**:: . * *...********:** ** **:. **.***
TIGR4 TLRKRFGLKDYVSPTEIDTDKNFVFIIDEINRGEISKIFGELFFSIDPGYRGEKGSVSTQ
D39 TLRKRFGLKDYISPEEVETDKKFVFIIDEINRGEISKIFGELFFSIDPGYRGEKGSVSTQ
D39V TLRKRFGLKDYISPEEVETDKKFVFIIDEINRGEISKIFGELFFSIDPGYRGEKGSVSTQ
Hungary19A-6 TLRKRFGLKDYVSPTEIDTDKKFVFIIDEINRGEISKIFGELFFSIDPGYRGEKGSVSTQ
EF3030 TLKKRFGLKDYISPEEVETDKNFVFIIDEINRGEISKIFGELFFSIDPGYRGEKGSVSTQ
**:********:** *::***:**************************************
TIGR4 YANLHETDEKFYIPENVYIIGTMNDIDRSVDTFDFAMRRRFRFVEVTVEGQAGMLDKELN
D39 YANLHETDEKFYIPENVYIIGTMNDIDRSVDTFDFAMRRRFRFVEVTAEGQVGMLDKDLN
D39V YANLHETDEKFYIPENVYIIGTMNDIDRSVDTFDFAMRRRFRFVEVTAEGQVGMLDKDLN
Hungary19A-6 YANLHETDEKFYIPENVYIIGTMNDIDRSVDTFDFAMRRRFRFVEVTAEGQVGMLDKELN
EF3030 YANLHETDEKFYIPENVYIIGTMNDIDRSVDTFDFAMRRRFRFVEVTVEGQAGMLDKELN
***********************************************.***.*****:**
TIGR4 IHAEEAKIRLRNLNAAIENIQELNSHYHIGPSYFLKLKDVDFDYELLWSDYIKPLLEDYL
D39 IHAEEAKIRLRNLNAAIENVQELNSHYHIGPSYFLKLKDVDFDYELLWSDYIKPLLEDYL
D39V IHAEEAKIRLRNLNAAIENVQELNSHYHIGPSYFLKLKDVDFDYELLWSDYIKPLLEDYL
Hungary19A-6 IHAEEAKIRLRNLNAAIENVQELNSHYHIGPSYFLKLKDVDFDYELLWSDYIKPLLEDYL
EF3030 IHAEEAKIRLRNLNAAIENIQELNSHYHIGPSYFLKLKDVDFDYELLWSDYIKPLLEDYL
*******************:****************************************
TIGR4 RGSYDEVETLETLKKAFDLTNNEQKDQAVADDNEGDENDDADY
D39 RGSYDEVETLETLKKAFELTNNEQKDQAVADDNEGDENDDADY
D39V RGSYDEVETLETLKKAFELTNNEQKDQAVADDNEGDENDDADY
Hungary19A-6 RGSYDEVETLETLKKAFDLTNNEQKDQAVADDNEGDENDDADY
EF3030 RGSYDEVETLETLKKAFDLTNNEQKDQAVADDNEGDENDDADY
*****************:*************************