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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
⊟Summary[edit | edit source]
- pan ID?: PNEUPAN002535000
- symbol?: ABC-NBD_12
- synonym:
- description?: ATP-binding cassette domain-containing protein
- ATP-binding cassette domain-containing protein
- ABC transporter, ATP-binding protein
- ABC transporter ATP-binding protein
- putative ABC transporter ATP-binding protein
- multidrug ABC transporter ATP-binding protein
- ABC-F family ATP-binding cassette domain-containing protein
- ABC transporter, ATP-binding protein (pseudogene)
- ABC transporter ATP-binding protein - unknown substrate
- ATPase component of ABC transporters with duplicated ATPase domains
- miro-like family protein
- putative ABC transporter ATP-binding protein YheS
- pseudogene
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 3245901..3247462
- occurrence?: in 100% of 43 strains
⊟Orthologs[edit | edit source]
⊟Genome Viewer[edit | edit source]
| TIGR4 | |
| D39 | |
| D39V | |
| Hungary19A-6 | |
| EF3030 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
TIGR4 MHYEHSRKGNHMIKINHLTITQNKDLRDLVSDLTMTIQDGEKVAIIGEEGNGKSTLLKIL
D39 MHYEHSRKGNHMIKINHLTITQNKDLRDLVSDLTMTIQDGEKVAIIGEEGNGKSTLLKTL
D39V MHYEHSRKGNHMIKINHLTITQNKDLRDLVSDLTMTIQDGEKVAIIGEEGNGKSTLLKTL
Hungary19A-6 MHYEHSRKGNHMIKINHLTITQNKDLRDLVSDLSMTIQDGEKVAIIGEEGNGKSTLLKIL
EF3030 MHYEHSRKGNHMIKINHLTITQNKDLRDLVSDLSMTIQDGEKVAIIGEEGNGKSTLLKIL
*********************************:************************ *
TIGR4 MGEALSDFTIKGNIQSDYQSLAYIPQKVPEDLKKKTLHDYFFLDSIDLDYSILYRLAEEL
D39 MGEDLSDFTIKGDIQSDYQSLAYIPQKVPEDLKKKTLHDYFFLDSIDLDYSILYRLAEEL
D39V MGEDLSDFTIKGDIQSDYQSLAYIPQKVPEDLKKKTLHDYFFLDSIDLDYSILYRLAEEL
Hungary19A-6 MGEALSDFTIKGNIQSDYQSLAYIPQKLPEELKKKTLHDYFFLDSIDLDYSILYRLAEEL
EF3030 MGEALSDFTIKGNIQSDYQSLAYIPQKLPEELKKKTLHDYFFLDSIDLDYSILYRLAEEL
*** ********:**************:**:*****************************
TIGR4 HFDSNRFASDQEIGNLSGGEALKIQLIHELAKPFEILFLDEPSNDLDLETVDWLKGQIQK
D39 HFDSNRFASDQEIGNLSGGEALKIQLIHELAKPFEILFLDEPSNDLDLETVDWLKGQIQK
D39V HFDSNRFASDQEIGNLSGGEALKIQLIHELAKPFEILFLDEPSNDLDLETVDWLKGQIQK
Hungary19A-6 HFDSNRFASDQKIGNLSGGEALKIQLIHELAKPFEILFLDEPSNDLDLETVDWLKGQIQK
EF3030 HFDSNRFASDQKIGNLSGGEALKIQLIHELAKPFEILFLDEPSNDLDLETVDWLKGQIQK
***********:************************************************
TIGR4 TRQTVIFISHDEDFLSETADTIVHLRLVKHRKEAETLVEHLDYDSYSEQRKANFAKQSQQ
D39 TRQTVIFISHDEDFLSETADTIVHLRLVKHRKEAETLVEHLDYDSYSEQRKANFAKQSQQ
D39V TRQTVIFISHDEDFLSETADTIVHLRLVKHRKEAETLVEHLDYDSYSEQRKANFAKQSQQ
Hungary19A-6 TRQTVIFISHDEDFLSETADTIVHLRLVKHRKEAETLVEHLDYDSYSEQRKANFAKQSQQ
EF3030 TRQTVIFISHDEDFLSETADTIVHLRLVKHRKEAETLVEHLDYDSYSEQRKANFAKQSQQ
************************************************************
TIGR4 AANNQRAYDKTMEKHRRVKQNVETALRATKDSTAGRLLAKKMKTVLSQEKRYEKAAQSMT
D39 AANNQRAYDKTMKKHRRVKQNVETALRATKDSTAGRLLAKKMKTVLSQEKRYEKAAQSMT
D39V AANNQRAYDKTMKKHRRVKQNVETALRATKDSTAGRLLAKKMKTVLSQEKRYEKAAQSMT
Hungary19A-6 AANNQRAYDKTMEKHRRVKQNVETALRATKDSTAGRLLAKKMKTVLSQEKRYEKTAQSMT
EF3030 AANNQRAYDKTMEKHRRVKQNVETALRATKDSTAGRLLAKKMKTVLSQEKRYEKTAQSMT
************:*****************************************:*****
TIGR4 QKPLEEEQIQLFFSDIQPLPASKVLVQLEKENLSIDDRVLVQKLQLTVRGQEKIGIIGPN
D39 QKPLEEEQIQLFFSDIQPLPASKVLVQLEKENLSIDDRVLVQKLQLTVRGQEKIGIIGPN
D39V QKPLEEEQIQLFFSDIQPLPASKVLVQLEKENLSIDDRVLVQKLQLTVRGQEKIGIIGPN
Hungary19A-6 QKPLEEEQIQLFFSDIQPLPASKVLVQLEKENLSIDDRVLVQKLQLTVRGQEKIGIIGPN
EF3030 QKPLEEEQIQLFFSDIQPLPASKVLVQLEKENLSIDDRVLVQKLQLTVRGQEKIGIIGPN
************************************************************
TIGR4 GVGKSTLLAKLQRLLNDKREISLGFMPQDYHKKLQLDLSPIAYLSKTGEKEELQKIQSHL
D39 GVGKSTLLAKLKQLLNDKREISLGFMPQDYHKKLQLDLSPIAYISKTGEKEELQKIQSHL
D39V GVGKSTLLAKLKQLLNDKREISLGFMPQDYHKKLQLDLSPIAYISKTGEKEELQKIQSHL
Hungary19A-6 GVGKSTLLAKLKQLLNDKREISLGFMPQDYHKKLQLDLSPIAYISKTGEKEELQKIQSHL
EF3030 GVGKSTLLAKLKQLLNDKREISLGFMPQDYHKKLQLDLSPIAYISKTGEKEELQKIQSHL
***********::******************************:****************
TIGR4 ASLNFSYPEMQHQIRSLSGGQQGKLLLLDLVLRKPNFLLLDEPTRNFSPTSQPQIRKLFA
D39 ASLNFSYPEMHHQIRSLSGGQQGKLLLLDLVLRKPNFLLLDEPTRNFSPTSQPQIRKLFA
D39V ASLNFSYPEMQHQIRSLSGGQQGKLLLLDLVLRKPNFLLLDEPTRNFSPTSQPQIRKLFA
Hungary19A-6 ASLNFSYPEMQHQIRSLSGGQQGKLLLLDLVLRKPNFLLLDEPTRNFSPTSQPQIRKLFA
EF3030 ASLNFSYPEMQHQIRSLSGGQQGKLLLLDLVLRKPNFLLLDEPTRNFSPTSQPQIRKLFA
**********:*************************************************
TIGR4 TYPGGLITVSHDRRFLKEVCSIIYRMTEHGLKLVNLEDL
D39 TYPGGLITVSHDRRFLKEICSIIYRMTEHGLKLVNLEDL
D39V TYPGGLITVSHDRRFLKEICSIIYRMTEHGLKLVNLEDL
Hungary19A-6 TYPGGLITVSHDRRFLKEICSIIYRMTEHGLKLVNLEDL
EF3030 TYPGGLITVSHDRRFLKEICSIIYRMTEHGLKLVNLEDL
******************:********************