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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
⊟Summary[edit | edit source]
- pan ID?: PNEUPAN002669000
- symbol?: gabR
- synonym:
- description?: PLP-dependent aminotransferase family protein
- PLP-dependent aminotransferase family protein
- GntR family regulatory protein
- transcriptional regulator GntR family
- GntR family transcriptional regulator
- HTH-type transcriptional regulatory protein
- transcriptional regulator
- conserved hypothetical protein
- aminotransferase class I and II family protein
- bifunctional GntR family transcriptional regulator/MocR family aminotransferase
- HTH-type transcriptional regulatory protein GabR
- Predicted transcriptional regulator of pyridoxine metabolism
- Putative transcriptional regulator of pyridoxine metabolism
- transcriptional regulator, GntR family
- transcriptional regulator containing a DNA-binding HTH domain and an aminotransferase domain (MocR family)
- pseudogene
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 3526934..3528207
- occurrence?: in 100% of 43 strains
⊟Orthologs[edit | edit source]
⊟Genome Viewer[edit | edit source]
| TIGR4 | |
| D39 | |
| D39V | |
| Hungary19A-6 | |
| EF3030 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
TIGR4 MKKQSKYKEVVSYLKNGIESGRFPTGSRLPSIRQLSLDFHCSKDTIQRALLELRHEQYLY
D39 MKKQSKYKEVVSYLKNGIESERFPTGSRLPSIRQLSLDFHCSKDTIQRALLELRHEQYLY
D39V MKKQSKYKEVVSYLKNGIESERFPTGSLLPSIRQLSLDFHCSKDTIQRALLELRHEQYLY
Hungary19A-6 MKKQSKYKEVVSYLKNGIESGRFPTGSRLPSIRQLSLDFHCSKDTIQRALLELRHEQYLY
EF3030 MKKQSKYKEVVSYLKNGIESGRFPTGSRLPSIRQLSLDFHCSKDTIQRALLELRHEQYLY
******************** ****** ********************************
TIGR4 AKPQSGYYVLEQGQHQDLEIEVTDEHASAYDDFRLCVNETLIGRENYLFNYYDNQEGLED
D39 AKPQSGYYVLEQGQHQDLEIEVTDEHASAYDDFRLCVNETLIGRENYLFNYYDNQEGLED
D39V AKPQSGYYVLEQGQHQDLEIEVTDEHASAYDDFRLCVNETLIGRENYLFNYYDNQEGLED
Hungary19A-6 AKPQSGYYVLEQGQHQDLEIEVTDEHASAYDDFRLCVNETLIGRENYLFNYYDNQEGLED
EF3030 AKPQSGYYVLEQGQHQDLEIEVTDEHASAYDDFRLCVNETLIGRENYLFNYYDNQEGLED
************************************************************
TIGR4 LRQSIHKLLFEQALYCKANQLVLTSGTQQALFILSQISFPRQAKEILVEQPTYHRMNRLL
D39 LRQSIHKLLFEQALYCKANQLVLTSGTQQALFILSQISFPRQAKEILVEQPTYHRMNRLL
D39V LRQSIHKLLFEQALYCKANQLVLTSGTQQALFILSQISFPRQAKEILVEQPTYHRMNRLL
Hungary19A-6 LRQSIHKLLFEQALYCKANQLVLTSGTQQALFILSQISFPRQAKEILVEQPTYHRMNRLL
EF3030 LRQSIHKLLFEQALYCKANQLVLTSGTQQALFILSQISFPRQAKEILVEQPTYHRMNRLL
************************************************************
TIGR4 IAQGLDYQTIERGIDGIDLEELEGHFKTGKIKFFYTIPRFHYPLGHSYSEQDKRSILNLA
D39 IAQGLDYQTIERGIDGIDLEELEGHFKTGKIKFFYTIPRFHYPLGHSYSEQDKRSILNLA
D39V IAQGLDYQTIERGIDGIDLEELEGHFKTGKIKFFYTIPRFHYPLGHSYSEQDKRSILNLA
Hungary19A-6 IAQGLDYQTIERGIDGIDLEELEGHFKTGKIKFFYTIPRFHYPLGHSYSEQDKRSILNLA
EF3030 IAQGLDYQTIERGIDGIDLEELEGHFKTGKIKFFYTIPRFHYPLGHSYSEQDKRSILNLA
************************************************************
TIGR4 AKYDVYIVEDDYLGDLDSKKGQTFHYLDTEERVIYIKSFSTSLFPALRITALILPNAIKE
D39 AKYDVYIVEDDYLGDLDSKKGQTFHYLDTEEHVIYIKSFSTSLFPALRITALILPNAIKE
D39V AKYDVYIVEDDYLGDLDSKKGQTFHYLDTEEHVIYIKSFSTSLFPALRITALILPNAIKE
Hungary19A-6 AKYDVYIVEDDYLGDLDSKKGQTFHYLDTEERVIYIKSFSTSLFPALRITALILPNAIKE
EF3030 AKYDVYIVEDDYLGDLDSKKGQTFHYLDTEERVIYIKSFSTSLFPALRITALILPNAIKE
*******************************:****************************
TIGR4 AFVAYKNILDYDSNLIMQKALSLYIDSQLFEKNRLARLTNHESYQKQIEERITKTPCPLP
D39 AFVAYKNILDYDSNLIMQKALSLYIDSQLFEKNRLARLTNHESYQKQIEERITKTPCPLP
D39V AFVAYKNILDYDSNLIMQKALSLYIDSQLFEKNRLARLTNHESYQKQIEERITKTPCPLP
Hungary19A-6 AFVAYKNILDYDSNLIMQKALSLYIDSQLFEKNRLARLTNHESYQKQIEERITKTPCPLP
EF3030 AFVAYKNILDYDSNLIMQKALSLYIDSQLFEKNRLARLTNHESYQKQIEERITKTPCPLP
************************************************************
TIGR4 HYSLHDGLLLDLRQYPKIASLKHSQLGLDFFEEAYLSTCPYQFAKVSLDNLENVLNYLKA
D39 HYPLHDGLLLDLRQYPKIASLKHSQLGLDFFEEAYLSTCPYQFAKVSLDNLENVLNYLKA
D39V HYPLHDGLLLDLRQYPKIASLKHSQLGLDFFEEAYLSTCPYQFAKVSLDNLENVLNYLKA
Hungary19A-6 HYPLHDGLLLDLRQYPKIASLKHSQLGLDFFEEAYLSTCPYQFAKVSLDNLENVLNYLKA
EF3030 HYPLHDGLLLDLRQYPKIASLKHSQPGLDFFEEAYLSTCPYQFAKVSLDNLENVLNYLKA
**.********************** **********************************
TIGR4 ELE
D39 ELE
D39V ELE
Hungary19A-6 ELE
EF3030 ELE
***