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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
⊟Summary[edit | edit source]
- pan ID?: PNEUPAN002677000
- symbol?: rsmF
- synonym:
- description?: RsmF rRNA methyltransferase first C-terminal domain-containing protein
- RsmF rRNA methyltransferase first C-terminal domain-containing protein
- NOL1/NOP2/sun family protein
- 23S rRNA methyltransferase
- Ribosomal RNA small subunit methyltransferase F
- tRNA and rRNA cytosine-C5-methylase
- nop2p
- tRNA and rRNA cytosine-C5-methylases
- pseudogene
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 3537664..3538968
- occurrence?: in 100% of 43 strains
⊟Orthologs[edit | edit source]
⊟Genome Viewer[edit | edit source]
| TIGR4 | |
| D39 | |
| D39V | |
| Hungary19A-6 | |
| EF3030 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
TIGR4 MQFPEGFVEKYKEILGDEARDFLASFEEEAVSAFRVNPLKEEQLSFSDAITQTPWGHYGK
D39 MQFPEGFVEKYKEILGDEARDFLASFEEEAVSAFRVNPLKEEQLSFSDAITQTPWGHYGK
D39V MQFPEGFVEKYKEILGDEARDFLASFEEEAVSAFRVNPLKEEQLSFSDAITQTPWGHYGK
Hungary19A-6 MQFPEGFVEKYEEILGDEARDFLASFEEEAVSAFRVNPLKEEQLSFSDAITQTPWGHYGK
EF3030 MQFPEGFVEKYKEILGDEARDFLASFEEEAVSAFRVNPLKEEQLSFSDAITQTPWGHYGK
***********:************************************************
TIGR4 VSGKSPEHATGLVYSQEPAAQMVAQVAQPSPGMKVLDLAAAPGGKSTQLAAYLAGEGLLV
D39 VSGKSPEHATGLVYSQEPAAQMVAQVAQPSPGMKVLDLAAAPGGKSTQLAAYLAGEGLLV
D39V VSGKSPEHATGLVYSQEPAAQMVAQVAQPSPGMKVLDLAAAPGGKSTQLAAYLAGEGLLV
Hungary19A-6 VSGKSPEHATGLVYSQEPAAQMVAQVAQPSPGMKVLDLAAAPGGKSTQLAAYLAGEGLLV
EF3030 VSGKSPEHATGLVYSQEPAAQMVAQVAQPSPGMKVLDLAAAPGGKSTQLAAYLAGEGLLV
************************************************************
TIGR4 SNEISSKRAKILVENMERFGATNVVVTNESADRLVKVFKGYFDLIVLDAPCSGEGMFRKQ
D39 SNEISSKRAKILVENMERFGATNVVVTNESADRLVKVFKGYFDLIVLDAPCSGEGMFRKQ
D39V SNEISSKRAKILVENMERFGATNVVVTNESADRLVKVFKGYFDLIVLDAPCSGEGMFRKQ
Hungary19A-6 SNEISSKRAKILVENMERFGATNVVVTNESADRLVKVFKGYFDLIVLDAPCSGEGMFRKQ
EF3030 SNEISSKRAKILVENMERFGATNVVVTNESADRLVKVFKGYFDLIVLDAPCSGEGMFRKQ
************************************************************
TIGR4 PDAMDYWSLDYPSQCASLQREILEDAVTMLAEGGHLVYSTCTWAPEENEEIVNWLLEEYD
D39 PDAMDYWSLDYPSQCASLQREILEDAVTMLAEGGRLVYSTCTWAPEENEEIVNWLLEEYD
D39V PDAMDYWSLDYPSQCASLQREILEDAVTMLAEGGRLVYSTCTWAPEENEEIVNWLLEEYD
Hungary19A-6 PDAMDYWSLDYPSQCASLQREILEDAVTMLAEGGHLVYSTCTWAPEENEEIVNWLLEEYD
EF3030 PDAMDYWSLDYPSQCASLQREILEDAVTMLAEGGRLVYSTCTWAPEENEEIVNWLLEEYD
**********************************:*************************
TIGR4 FDLLPVEHINGMVAGIDLPETARMYPHQFKGEGQFVAHLQFKGNNPAPKFKASKSNLSRE
D39 FDLLPVEHINGMVAGIDLPETARMYPHQFKGEGQFVAHLQFKGNNPAPKFKASKSNLSRE
D39V FDLLPVEHINGMVAGIDLPETARMYPHQFKGEGQFVAHLQFKGNNPAPKFKASKSNLSRE
Hungary19A-6 FDLLPVEHINGMVAGIDLPETARMYPHQFKGEGQFVAYLQFKGNNPAPKFKASKSNLSRE
EF3030 FDLLPVEHINGMVAGIDLPETARMYPHQFKGEGQFVAHLQFKGNNPAPKFKASKSNLSRE
*************************************:**********************
TIGR4 QVALWQEFAQNHLKVNLPGILQIFGDQLYLLPELLPDLWKLKIARNGLHLGTFKKKRFEP
D39 QVALWQEFAQNHLKVNLPGILQTFGDQLYLLPELLPDLGKLKIARNGLHLGTFKKKRFEP
D39V QVALWQEFAQNHLKVNLPGILQTFGDQLYLLPELLPDLGKLKIARNGLHLGTFKKKRFEP
Hungary19A-6 QVALWQEFAQNHLKVNLPGILQTFGDQLYLLPELLPDLGKLKIARNGLHLGTFKKKRFEP
EF3030 QVALWQEFAQNHLKVNLPGILQTFGDQLYLLPELLPDLGKLKIARNGLHLGTFKKKRFEP
********************** *************** *********************
TIGR4 SFALGLALKPSQVEQSVEIGQEAFVKYAAGETVQLAESLPNGWYQVLVKGNGLGFAKVTG
D39 SFALGLALKPSQVEQSVEIGQEAFVKYAAGETVQLAESLPNGWYQVLVKGNGLGFAKVTG
D39V SFALGLALKPSQVEQSVEIGQEAFVKYAAGETVQLAESLPNGWYQVLVKGNGLGFAKVTG
Hungary19A-6 SFALGLALKPSQVEQSVEIGQEEFVKYAAGETVQLAESLPNGWYQVLVKGNGLGFAKVTG
EF3030 SFALGLALKPSQVEQSVEIGQEAFVKYAAGETVQLAESLPNGWYQVLVKGNGLGFAKVTG
********************** *************************************
TIGR4 NVLKNYFPKGLRFK
D39 NVLKNYFPKGLRFK
D39V NVLKNYFPKGLRFK
Hungary19A-6 NVLKNYFPKGLRFK
EF3030 NVLKNYFPKGLRFK
**************