PangenomeTIGR4

serotype 4

D39

serotype 2

D39V

serotype 2

Hungary19A-6

serotype 19A

EF3030

serotype 19F

670-6B

serotype 6B

6A-10

serotype 6A

70585

serotype 5

A026

serotype 19F

A66

serotype 3

AP200

serotype 11A

ASP0581

serotype 12F

ATCC 49619

serotype 19F

ATCC 700669

serotype 23F

BVJ1JL

serotype 1

CGSP14

serotype 14

G54

serotype 19F

HU-OH

serotype 3

Hu15

serotype 19A

Hu17

serotype 19A

INV104

serotype 1

INV200

serotype 14

JJA

serotype 14

MDRSPN001

serotype 19F

NCTC7466

serotype 2

NU83127

serotype 4

OXC141

serotype 3

P1031

serotype 1

R6

serotype 2

SP49

serotype 19A

SPN032672

serotype 1

SPN034156

serotype 3

SPN034183

serotype 3

SPN994038

serotype 3

SPN994039

serotype 3

SPNA45

serotype 3

ST556

serotype 19F

TCH8431/19A

serotype 19A

Taiwan19F-14

serotype 19F

Xen35

serotype 4

gamPNI0373

serotype 1

⊟Summary

• pan ID^?: PNEUPAN002849000
• symbol^?: atpA
• synonym:
• description^?: F0F1 ATP synthase subunit alpha

  descriptions from strain specific annotations:

  • F0F1 ATP synthase subunit alpha
  • ATP synthase F1, alpha subunit
  • ATP synthase alpha chain
  • ATP synthase subunit alpha
  • ATP F0F1 synthase subunit alpha
  • ATP synthase F1 sector alpha chain
  • ATP synthase subunit A
  • F0F1-type ATP synthase, alpha subunit
  • Proton-translocating ATPase, F1 sector, alpha-subunit
• strand^?: -
• coordinates^?: 3641895..3643400
• occurrence^?: in 100% of 41 strains

⊟Orthologs

TIGR4:
SP_RS07435 (atpA)
D39:
SPD_RS07120 (atpA)
D39V:
SPV_RS07115 (atpA)
Hungary19A-6:
SPH_RS07860 (atpA)
EF3030:
EF3030_RS07080 (atpA)
670-6B:
SP670_RS07875 (atpA)
6A-10:
HKM25_RS07005 (atpA)
70585:
SP70585_RS07655 (atpA)
A026:
T308_RS06960 (atpA)
A66:
A66_RS06690 (atpA)
AP200:
SPAP_RS07550 (atpA)
ASP0581:
EL334_RS07700 (atpA)
ATCC 49619:
EL263_RS07275 (atpA)
ATCC 700669:
SPN23F_RS07440 (atpA)
BVJ1JL:
JN057_RS07310 (atpA)
CGSP14:
SPCG_RS07735 (atpA)
G54:
SPG_RS07145 (atpA)
gamPNI0373:
HMPREF1038_RS07290 (atpA)
HU-OH:
EL271_RS07400 (atpA)
Hu15:
SPNHU15_RS07280 (atpA)
Hu17:
SPNHU17_RS07200 (atpA)
INV104:
INV104_RS07375 (atpA)
INV200:
SPNINV200_RS07195 (atpA)
JJA:
SPJ_RS06995 (atpA)
MDRSPN001:
MDRSPN_RS06485 (atpA)
NCTC7466:
DQM66_RS07115 (atpA)
NU83127:
EL277_RS07500 (atpA)
OXC141:
SPNOXC_RS07125 (atpA)
P1031:
SPP_RS07505 (atpA)
R6:
SPR_RS06780 (atpA)
SP49:
BMJ42_RS07735 (atpA)
SPN032672:
SPN032672_RS02260 (atpA)
SPN034156:
SPN034156_RS02195 (atpA)
SPN034183:
SPN034183_RS07145 (atpA)
SPN994038:
SPN994038_RS07050 (atpA)
SPN994039:
SPN994039_RS07050 (atpA)
SPNA45:
SPNA45_RS04080 (atpA)
ST556:
MYY_RS07395 (atpA)
Taiwan19F-14:
SPT_RS07185 (atpA)
TCH8431/19A:
HMPREF0837_RS08330 (atpA)
Xen35:
CXP32_RS07515 (atpA)

⊟Genome Viewer

TIGR4
D39
D39V
Hungary19A-6
EF3030

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
  
  
  TIGR4           MAKLIPGKIRIEGVALYETGKVDIIKEKNNRLYARVAEEELRYSLEDDLVFCACDFFQKR
  D39             MAKLIPGKIRIEGVALYETGKVDIIKEKNNRLYARVAEEELRYSLEDDLVFCACDSFQKR
  D39V            MAKLIPGKIRIEGVALYETGKVDIIKEKNNRLYARVAEEELRYSLEDDLVFCACDSFQKR
  Hungary19A-6    MAKLIPGKVRIEGVTLYETGKVDIIKEKNNRLYARVAEEELRYSLEDDLVFCACDFFQKR
  EF3030          MAKLIPGKIRIEGVALYETGKVDIIKEKNNRLYARVAEEELRYSLEDDLVFCACDFFQKR
                  ********:*****:**************************************** ****
  
  TIGR4           GYCVHLAALEHFLKNDERGQEILWSLEEGHEEKEAVETKVTLGGKFLDRILSPKSECAYE
  D39             GYCVHLAALEHFLKNDERGQEILWSLEEGHEEKEAVETKVTLGGKFLDRILSPKSECAYE
  D39V            GYCVHLAALEHFLKNDERGQEILWSLEEGHEEKEAVETKVTLGGKFLDRILSPKSECAYE
  Hungary19A-6    GYCVHLAALEHFLKNDERGQEILQSLEEGHEEKEAVETKVTLGSKFLDRILSPKSERAYE
  EF3030          GYCVHLAALEHFLKNDERGQEILWSLEEGHEEKEAVETKVTLGGKFLDRILSPKSECAYE
                  *********************** *******************.************ ***
  
  TIGR4           LSAVGQVEAGTNHILWTLRIGQINSQKYYVIRDIPLFLRIVEQRKSYMIGKIYEESLSWE
  D39             LSAVGQVEAGTNHILWTLRIGQINSQKYYIIRDIPLFLRIVEQRKSYMIGKIYEESLSWE
  D39V            LSAVGQVEAGTNHILWTLRIGQINSQKYYIIRDIPLFLRIVEQRKSYMIGKIYEESLSWE
  Hungary19A-6    LSAVGQVEAGSNHILWTLRIGQINSQKYYVIRDIPLFLRVVEKRKPYMIGKTYEESLSWE
  EF3030          LSAVGQVEAGTNHILWTLRIGQINSQKYYVIRDIPLFLRIVEQRKSYMIGKIYEESLSWE
                  **********:******************:*********:**:**.***** ********
  
  TIGR4           AFDDASQELLTFLHGLTEEGLVPDLFFQNQGRHLFFPLTFFEQGVNLLMALPHFQFDHQV
  D39             AFDDASQELLTFLHGLTEEGLVPDLFFQNQGRHLFFPLTFFEQGVNLLMALPHFQFDHQV
  D39V            AFDDASQELLTFLHGLTEEGLVPDLFFQNQGRHLFFPLTFFEQGVNLLMALPHFQFDHQV
  Hungary19A-6    SFDEASQELLTFLRGLMEEGLTPDLFFQNQGRHLFFPLTFFEQGVNLLMTLPHFQFDHQV
  EF3030          AFDDASQELLTFLHGLTEEGLVSDLFFQNQGRHLFFPLTFFEQGVNLLMALPHFQFDHQV
                  :**:*********:** ****..**************************:**********
  
  TIGR4           DSYQTLLFQDMHADANLFAFTVTEYSDYFEMEISESPRVNVFYQGAVLFHKGQVYFLTDQ
  D39             DSYQTLLFQDMHADANLFAFAVTEYSDYFEMEISESPRVNVFYQGAVLFHKGQVYFLTDQ
  D39V            DSYQTLLFQDMHADANLFAFAVTEYSDYFEMEISESPRVNVFYQGAVLFHKGQVYFLTDQ
  Hungary19A-6    DSYQTLLFQDMHADANLFAFTVTAYSDYFEMEISESPRVNVFYQGAVLFHKGQVYFLTDQ
  EF3030          DSYQTLLFQDMHADANLFAFTVTEYSDYFEMEISESPRVNVFYQGAVLFHKGQVYFLTDQ
                  ********************:** ************************************
  
  TIGR4           QMRLLKEIKALPVGQQGKKYLQFDSSDRDKLASCLTLFIQMGTVSAPERLQIKTFAPSFY
  D39             QMRLLKEIKALPVGQQGKKYLQFDSSDRDKLASCLTLFIQMGTVSAPERLQIKTFAPSFY
  D39V            QMRLLKEIKALPVGQQGKKYLQFDSSDRDKLASCLTLFIQMGTVSAPERLQIKTFAPSFY
  Hungary19A-6    QMSLLKEIKALPLDQHSKKYLQFDSSDRDKLASCLTLFSQMGTVSAPERLQIKTFVPSFY
  EF3030          QMRLLKEIKALPVGQQGKKYLQFDSSDRDKLASCLTLFIQMGTVSAPERLQIKTFAPSFY
                  ** *********:.*:.********************* ****************.****
  
  TIGR4           FDREEDNRIRLEIQFDYGNRQVSSRQELEELPFSSDADLEERIFQVCLAAGFEADFQSWR
  D39             FDREEDNRIRLEIQFDYGNRQVSSRQELEELPFSSDADLEERIFQVCLAAGFEADFQSWR
  D39V            FDREEDNRIRLEIQFDYGNRQVSSRQELEELPFSSDADLEERIFQVCLAAGFEADFQSWR
  Hungary19A-6    FDREEDNRIRLEIQFDYGNRQVSSRQELEELPFSSDVDLEERIFQVCLAAGFEADFQSWR
  EF3030          FDREEDNRIRLEIQFDYGNRQVSSRQELEELPFSSDADLEERIFQVCLAAGFEADFQSWR
                  ************************************.***********************
  
  TIGR4           QALKAESVYHFFHDIIPVFEKLGHVDLSDKLEELYSLASPQVQIASKGGLLEIQFDFQNI
  D39             QALKAESVYHFFHDIIPVFEKLGHVDLSDKLEELYSLASPQVQIASKGGLLEIQFDFQNI
  D39V            QALKAESVYHFFHDIIPVFEKLGHVDLSDKLEELYSLASPQVQIASKGGLLEIQFDFQNI
  Hungary19A-6    QALKAESVYHFFHEIIPVFEKLGNVDLSDKLEELYSLASPQVQIASKGGLLEIQFDFQDI
  EF3030          QALKAESVYHFFHDIIPVFEKLGHVDLSDKLEELYSLASPQVQIASKGGLLEIQFDFQDI
                  *************:*********:**********************************:*
  
  TIGR4           VQEEIDQAMQALVANQDFYIDSSNQVYFFDEETKKIRQNLQELGQFELKDGTLQARKSLA
  D39             AQEEIDQAMQALVANQDFYIDSSNQVYFFDEETKKIRQNLQELGQFELKDGTLQARKSLA
  D39V            AQEEIDQAMQALVANQDFYIDSSNQVYFFDEETKKIRQNLQELGQFELKDGTLQARKSLA
  Hungary19A-6    AQEEIDQAMQALVANQDFYIDSSNRVYFFDEETKKIRQNLQELGQFELKDGSLQTRKSLA
  EF3030          AQEEIDQAMQALVANQDFYIDSSNQVYFFDEETKKIRQNLQELGQFELKDGTLQARKSLA
                  .***********************:**************************:**:*****
  
  TIGR4           YSLAHLFEGRDRVSFSQEFQNLAQDLTHPEDFPLQATQVKADLRDYQEKGIGWLQMLHHY
  D39             YSLAHLFEGRDRVSFSQEFQNLAQDLTHPEDFPLQATQVKADLRDYQEKGIGWLQMLHHY
  D39V            YSLAHLFEGRDRVSFSQEFQNLAQDLTHPEDFPLQATQVKADLRDYQEKGIGWLQMLHHY
  Hungary19A-6    YSLSHLFEGRDRVSFSQEFQNLAHDLTHPEDFPRQATQVQADLRDYQEKGIGWLQMLHHY
  EF3030          YSLAHLFEGRDRVSFSQEFQNLAQDLTHPEDFPRQATQVQADLRDYQEKGIGWLQMLHHY
                  ***:*******************:********* *****:********************
  
  TIGR4           GFGGILADDMGLGKTLQTIAFLTSQVTKESRVLILAPSGLIYNWADEFQKFAPQLDVTVV
  D39             DFGGILADDMGLGKTLQTIAFLTSQVTKESRVLILAPSGLIYNWADEFQKFAPQLDVAVV
  D39V            DFGGILADDMGLGKTLQTIAFLTSQVTKESRVLILAPSGLIYNWADEFQKFAPQLDVAVV
  Hungary19A-6    GFGGILADDMGLGKTLQTIAFLTSQVTKESRVLILAPSGLIYNWADEFQKFAPQLDVAVV
  EF3030          GFGGILADDMGLGKTLQTIAFLTSQVTKESRVLILAPSGLIYNWADEFQKFAPQLDVAVV
                  .********************************************************:**
  
  TIGR4           HGLKASREEILAESHQIYVTSYATFRQDSEFYQGMAFDFLFLDEAQVMKNAQTKIAQTLR
  D39             HGLKASREEILAESHQIYVTSYATFRQDSELYQGMAFDFLFLDEAQVMKNAQTKIAQTLR
  D39V            HGLKASREEILAESHQIYVTSYATFRQDSELYQGMAFDFLFLDEAQVMKNAQTKIAQTLR
  Hungary19A-6    HGLKASREEILAESHQIYVTSYATFRQDSELYQGMAFDFLFLDEAQVMKNAQTKIAQTLR
  EF3030          HGLKASREEILAESHQIYVTSYATFRQDSELYQGMAFDFLFLDETQVMKNAQTKIAQTLR
                  ******************************:*************:***************
  
  TIGR4           QFVVPSVFALSGTPIENHLGELWSIFQIVMPGLLPSKKEFMKLPAERVAQFIKPFVMRRK
  D39             QFVVPSVFALSGTPIENHLGELWSIFQIVMPGLLPSKKEFMKLPAERVAQFIKPFVMRRK
  D39V            QFVVPSVFALSGTPIENHLGELWSIFQIVMPGLLPSKKEFMKLPAERVAQFIKPFVMRRK
  Hungary19A-6    QFVVPSVFALSGTPIENHLGELWSIFQIVMPGLLPSKKEFMKLPAERVAQFIKPFVMRRK
  EF3030          QFVVPSVFALSGTPIENHLGELWSIFQIVMPGLLPSKKEFMKLPAERVAQFIKPFVMRRK
                  ************************************************************
  
  TIGR4           KEEVLTELPDLIEVVYKNELEDQQKAIYLAQLQQMRDHLAQVSEQEFQRSRVEILSGLMR
  D39             KEEVLTELPDLIEVVYKNELEDQQKAIYLAQLQQMRDHLAQVSEQEFQRSRVEILSGLMR
  D39V            KEEVLTELPDLIEVVYKNELEDQQKAIYLAQLQQMRDHLAQVSEQEFQRSRVEILSGLMR
  Hungary19A-6    KEEVLTELPDLIEVVYKNELEDQQKAIYLAQLQQMRDRLAQVSDQEFQRSRVEILSGLMR
  EF3030          KEEVLTELPDLIEVVYKNELEDQQKAIYLAQLQQMRDHLAQVSEQEFQRSRVEILSGLMR
                  *************************************:*****:****************
  
  TIGR4           LRQICDTPALFMEDYQGASGKLDSLRDLLVQVADGGHRVLIFSQFKGMLEKIEQELPDLG
  D39             LRQICDTPALFMEDYQGASGKLDSLRDLLVQVADGGHRVLIFSQFKGMLEKIEQELPDLG
  D39V            LRQICDTPALFMEDYQGASGKLDSLRDLLVQVADGGHRVLIFSQFKGMLEKIEQELPDLG
  Hungary19A-6    LRQICDTPALFMEDYQGASGKLDSLRDLLVQVADGGHRVLIFSQFKGMLEKIEQELPDLG
  EF3030          LRQICDTPALFMEDYQGASGKLDSLRDLLVQVADGGHRVLIFSQFKGMLEKIEQELPDLG
                  ************************************************************
  
  TIGR4           LTSFKITGSTPAKERQDMTKAFNQGERDAFLISLKAGGVGLNLTGADTVILVDLWWNPAV
  D39             LTSFKITGSTPAKERQDMTKAFNQGERDAFLISLKAGGVGLNLTGADTVILVDLWWNPAV
  D39V            LTSFKITGSTPAKERQDMTKAFNQGERDAFLISLKAGGVGLNLTGADTVILVDLWWNPAV
  Hungary19A-6    LTSFKITGSTPAKERQDMTKAFNQGERDAFLISLKAGGVGLNLTGADTVILVDLWWNPAV
  EF3030          LTSFKITGSTPAKERQDMTKAFNQGERDAFLISLKAGGVGLNLTGADTVILVDLWWNPAV
                  ************************************************************
  
  TIGR4           EAQAIGRAHRMGQEETVEVYRLVTKGTIEEKIQELQEQKKHLVSQVLDGTESRGSLTLAE
  D39             EAQAIGRAHRMGQEETVEVYRLVTKGTIEEKIQELQEQKKHLVSQVLDGTESRGSLTLAE
  D39V            EAQAIGRAHRMGQEETVEVYRLVTKGTIEEKIQELQEQKKHLVSQVLDGTESRGSLTLAE
  Hungary19A-6    EAQAIGRAHRMGQEETVEVYRLVTQGTIEEKIQELQEQKKHLVSQVLDGTESRGSLTLAE
  EF3030          EAQAIGRAHRMGQEETVEVYRLVTKGTIEEKIQELQEQKKHLVSQVLDGTESRGSLTLAE
                  ************************:***********************************
  
  TIGR4           IREILGISEAST
  D39             IREILGISEAST
  D39V            IREILGISEAST
  Hungary19A-6    IREILGISEAST
  EF3030          IREILGISEAST
                  ************