Jump to navigation
Jump to search
PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
⊟Summary[edit | edit source]
- pan ID?: PNEUPAN003041000
- symbol?: sirH
- synonym:
- description?: HAMP domain-containing histidine kinase
- HAMP domain-containing histidine kinase
- Histidine kinase
- sensor histidine kinase
- sensor histidine kinase protein
- Sensor histidine kinase GraS
- ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
- histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein
- Histidine kinase of two-component regulatory system SirRH
- histidine kinase TCS01
- Signal transduction histidine kinase
- two-component signal (TCS01) sensor histidine kinase
- Two-component system histidine kinase
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 3948387..3949361
- occurrence?: in 100% of 43 strains
⊟Orthologs[edit | edit source]
⊟Genome Viewer[edit | edit source]
| TIGR4 | |
| D39 | |
| D39V | |
| Hungary19A-6 | |
| EF3030 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
TIGR4 MLDWKQFFLAYLRSRSRLFIYLLSLAFLVLLFQFLFASLGIYFLYFFFLCCFVTILFFTW
D39 MLDWKQFFLAYLRSRSRLFIYLLSLAFLVLLFQFLFASLGIYFLYFFFLCCFVTILFFTW
D39V MLDWKQFFLAYLRSRSRLFIYLLSLAFLVLLFQFLFASLGIYFLYFFFLCCFVTILFFTW
Hungary19A-6 MLDWKQFFLAYLRSRSRLFIYLLSLAFLVLLFQFLFASLGIYFLYFFFLCCFVTILFFTW
EF3030 MLDWKQFFLAYLRSRSRLFIYLLSLAFLVLLFQFLFASLGIYFLYFFFLCCFVTILFFTW
************************************************************
TIGR4 DILVETQVYRQELLYGEREAKSPLEIALAEKLEAREMELYQQRSKAERKLTDLLDYYTLW
D39 DILVETQVYRQELLYGEREAKSPLEIALAEKLEAREMELYQQRSKAERKLTDLLDYYTLW
D39V DILVETQVYRQELLYGEREAKSPLEIALAEKLEAREMELYQQRSKAERKLTDLLDYYTLW
Hungary19A-6 DILVETQVYRQELLYGEREAKSPLEIALAEKLEAREMELYQQRSKAERKLTDLLDYYTLW
EF3030 DILVETQVYRQELLYGEREAKSPLEIALAEKLEAREMELYQQRSKAERKLTDLLDYYTLW
************************************************************
TIGR4 VHQIKTPIAASQLLVAEVVDRQLKQQLEQEIFKIDSYTNLVLQYLRLESFHDDLVLKQVQ
D39 VHQIKTPIAASQLLVAEVVDRQLKQQLEQEIFKIDSYTNLVLQYLRLESFHDDLVLKQVQ
D39V VHQIKTPIAASQLLVAEVVDRQLKQQLEQEIFKIDSYTNLVLQYLRLESFHDDLVLKQVQ
Hungary19A-6 VHQIKTPIAASQLLVAEVVDRQLKQQLEQEIFKIDSYTNLVLQYLRLESFHDDLVLKQVQ
EF3030 VHQIKTPIAASQLLVAEVVDRQLKQQLEQEIFKIDSYTNLVLQYLRLESFHDDLVLKQVQ
************************************************************
TIGR4 IEDLVKEIIRKYALFFIQKGLNVNLHDLDKEIVTDKKWLLVVIEQIISNSLKYTKEGGLE
D39 IEDLVKEIIRKYALFFIQKGLNVNLHDLDKEIVTDKKWLLVVIEQIISNSLKYTKEGGLE
D39V IEDLVKEIIRKYALFFIQKGLNVNLHDLDKEIVTDKKWLLVVIEQIISNSLKYTKEGGLE
Hungary19A-6 IEDLVKEIIRKYALFFIQKGLNVNLHDLDKEIVTDKKWLLVVIEQIISNSLKYTKEGGLE
EF3030 IEDLVKEIIRKYALFFIQKGLNVNLHDLDKEIVTDKKWLLVVIEQIISNSLKYTKEGGLE
************************************************************
TIGR4 IYMDDQELCIKDTGIGIKNSDVLRVFERGFSGYNGRLTQQSSGLGLYLSKKISEELGHQI
D39 IYMDDQELCIKDTGIGIKNSDVLRVFERGFSGYNGRLTQQSSGLGLYLSKKISEELGHQI
D39V IYMDDQELCIKDTGIGIKNSDVLRVFERGFSGYNGRLTQQSSGLGLYLSKKISEELGHQI
Hungary19A-6 IYMDDQELCIKDTGIGIKNSDVLRVFERGFSGYNGRLTQQSSGLGLYLSKKISEELGHQI
EF3030 IYMDDQELCIKDTGIGIKNSDVLRVFERGFSGYNGRLTQQSSGLGLYLSKKISEELGHQI
************************************************************
TIGR4 RIESEVGKGTTVRIQFAQVNLVLE
D39 RIESEVGKGTTVRIQFAQVNLVLE
D39V RIESEVGKGTTVRIQFAQVNLVLE
Hungary19A-6 RIESEVGKGTTVRIQFAQVNLVLE
EF3030 RIESEVGKGTTVRIQFAQVNLVLE
************************