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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
⊟Summary[edit | edit source]
- pan ID?: PNEUPAN003067000
- symbol?: —
- synonym:
- description?: ABC transporter permease
- ABC transporter permease
- FtsX-like permease family protein
- efflux ABC transporter, permease protein
- ABC transporter permease protein
- ABC transporter permease protein (pseudogene)
- peptide ABC transporter permease
- ABC transporter, permease protein
- ABC transporter permease protein (permease)
- ABC-type antimicrobial peptide transport system, permease component
- macB-like periplasmic core domain protein
- putative membrane protein
- pseudogene
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 3976056..3978879
- occurrence?: in 100% of 43 strains
⊟Orthologs[edit | edit source]
⊟Genome Viewer[edit | edit source]
| TIGR4 | |
| D39 | |
| D39V | |
| Hungary19A-6 | |
| EF3030 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
TIGR4 MIKRKTYWKDLVQSFTGSKGRFLSILILMMLGSLALVGLKVTSPNMEATANAYLTTAQTL
D39 MIKRKTYWKDLIQSFTGSKGRFLSILILMMLGSLALVGLKVTSPNMEATANAYLTTAQTL
D39V MIKRKTYWKDLIQSFTGSKGRFLSILILMMLGSLALVGLKVTSPNMEATANAYLTTAQTL
Hungary19A-6 MIKRKTYWKDLIQSFTGSKGRFLSILILMMLGSLALVGLKVTSPNMEATANAYLTTAQTL
EF3030 MIKRKTYWKDLIQSFTDSKGRFLSILILMMLGSLALVGLKVTSPNMEATANAYLTTAQTL
***********:****.*******************************************
TIGR4 DLAVMSNYGLDQADQEELKQTEGAEVEFGYLTDVTMDNGQDAIRLYSKPERISTFQLRKG
D39 DLAVMSNYGLDQADQEELKQTEGAEVEFGYLTDVTMDNGQDAIRLYSKPERISTFQLRKG
D39V DLAVMSNYGLDQADQEELKQTEGAEVEFGYLTDVTMDNGQDAIRLYSKPERISTFQLRKG
Hungary19A-6 DLAVMSNYGLDQADQEELKQTEGAEVEFGYLTDVTMDNGQDAIRLYSKPERISTFQLRKG
EF3030 DLAVMSNYGLDQADQEELKQTEGAEVEFGYLTDVTMDNGQDAIRLYSKPERISTFQLRKG
************************************************************
TIGR4 RLPQSDKEIALATHLQGQYSVGQEISFKEKEEGHSSLKDHTYTITGFVDSAEILSQRDMG
D39 RLPQSDKEIALATHLQGQYSVGQEISFKEKEEGHSSLKDHTYTITGFVDSAEILSQRDMG
D39V RLPQSDKEIALATHLQGQYSVGQEISFKEKEEGHSSLKDHTYTITGFVDSAEILSQRDMG
Hungary19A-6 RLPQSDKEIALATHLQGQCSVGQEISFKEKEEGHSSLKDHTYTITGFVDSAEILSQRDMG
EF3030 RLPQSDREIALATHLQGQYSVGQEISFKEKEEGHSSLKDHTYTITGFVDSAEILSQRDMG
******:*********** *****************************************
TIGR4 YAGSGSGTLTAYGVILPSQFDQKVYNIARLKYQDLAGLNAFSSAYEEKSKQHQEELEQIL
D39 YAGSGSGTLTAYGVILPSQFDQKVYNIARLKYQDLAGLNAFSSAYEEKSKQHQEELEQIL
D39V YAGSGSGTLTAYGVILPSQFDQKVYNIARLKYQDLAGLNAFSSAYEEKSKQHQEELEQIL
Hungary19A-6 YAGSGSGTLTAYGVILPSQFDQKVYNIARLKYQDLAGLNAFSSAYEEKSKQHQEDLEQTL
EF3030 YAGSGSGTLTAYGVILPSQFDQKVYNIARLKYQDLAGLNAFSSAYEEKSKQHQEELEQIL
******************************************************:*** *
TIGR4 SDNGKVRLQLLKKEGQESLDKGQETLDKAQTNLQEGKRRLAAAQARIQAQESQLALFPQV
D39 SDNGKVRLQLLKKEGQESLDKGQETLDKAQTNLQEGKRRLAAAQARIQAQESQLALFPQV
D39V SDNGKVRLQLLKKEGQESLDKGQETLDKAQTNLQEGKRRLAAAQARIQAQESQLALFPQV
Hungary19A-6 SDNGKVRLQLLKKEGQESLDKGQETLDKAQTNLQEGKRRLAAAQARIQAQESQLALFPQV
EF3030 SDNGKVRLQLLKKEGQESLDKGQETLDKAQTNLQEGKRRLAAAQARIQAQESQLALFPQV
************************************************************
TIGR4 QREQASAQLTQAKQELGKEEDKLKQAEQNLAQEKEKLEKHQQVLDDLAEPRYQVYNRQTM
D39 QREQASAQLTQAKQELGKEEDKLKQAEQNLAQEKEKLEKHQQVLDDLAEPRYQVYNRQTM
D39V QREQASAQLTQAKQELGKEEDKLKQAEQNLAQEKEKLEKHQQVLDDLAEPRYQVYNRQTM
Hungary19A-6 QREQASAQLTQAKQELGKEEDKLKQAEQNLAQEKEKLEKHQQVLDDLAEPRYQVYNRQTM
EF3030 QREQASAQLTQAKQELGKEEDKLKQAEQNLAQEKEKLEKHQQVLDDLAEPRYQVYNRQTM
************************************************************
TIGR4 PGGQGYLMYSNASSSIRAVGNIFPVVLYAVAAMVTFTTMTRFVDEERTHAGIFKALGYRS
D39 PGGQGYLMYSNASSSIRAVGNIFPVVLYAVAAMVTFTTMTRFVDEERTHAGIFKALGYRS
D39V PGGQGYLMYSNASSSIRAVGNIFPVVLYAVAAMVTFTTMTRFVDEERTHAGIFKALGYRS
Hungary19A-6 PGGQGYLMYSNASSSIRAVGNIFPVVLYAVAAMVTFTTMTRFVDEERTHAGIFKALGYRS
EF3030 PGGQGYLMYSNASSSIRAVGNIFPVVLYAVAAMVTFTTMTRFVDEERTHAGIFKALGYRS
************************************************************
TIGR4 KDIIAKFLLYGLVAGTVGTALGSILGHYLLASVISSVITKGMVVGETQIQFYWTYSLLAF
D39 KDIIAKFLLYGLVAGTVGTALGSILGHYLLASVISSVITKGMVVGETQIQFYWTYSLLAL
D39V KDIIAKFLLYGLVAGTVGTALGSILGHYLLASVISSVITKGMVVGETQIQFYWTYSLLAL
Hungary19A-6 KDIIAKFLLYGLVAGTVGTALGSILGHYLLASVISSVITKGMVVGETQIQFYWTYSLLAL
EF3030 KDIIAKFLLYGLVAGTVGTALGSILGHYLLASVISSVITKGMVVGETQIQFYWTYSLLAL
***********************************************************:
TIGR4 VLSLLASVLPAYLVAWRELHDEAAQLLLPKPPVKGAKILLERIGFIWRRLSFTHKVTARN
D39 VLSWLASVLPAYLVAWRELHDEAAQLLLPKPPVKGAKILLERIGFIWRRLSFTHKVTARN
D39V VLSWLASVLPAYLVAWRELHDEAAQLLLPKPPVKGAKILLERIGFIWRRLSFTHKVTARN
Hungary19A-6 VLSWLASVLPAYLVAWRELHAEAAQLLLPKPPVKGAKILLERIGFIWRRLSFTHKVTARN
EF3030 VLSWLASVLPAYLVAWRELHDEAAQLLLPKPPVKGAKILLERIGFIWRRLSFTHKVTARN
*** **************** ***************************************
TIGR4 IFRYKQRMLMTIFGVAGSVALLFAGLGIQSSVAGVPSKQFQQIQQYQMLVSENPSATNQD
D39 IFRYKQRMLMTIFGVAGSVALLFAGLGIQSSVAGVPSKQFQQIQQYQMLVSENPSATNQD
D39V IFRYKQRMLMTIFGVAGSVALLFAGLGIQSSVAGVPSKQFQQIQQYQMLVSENPSATNQD
Hungary19A-6 IFRYKQRMLMTIFGVAGSVALLFAGLGIQSSVAGVPSKQFQQIQQYQMLVSENPSATDQD
EF3030 IFRYKQRMLMTIFGVAGSVALLFAGLGIQSSVAGVPSKQFQQIQQYQMLVSENPSATNQD
*********************************************************:**
TIGR4 KVELAEVLKGQEILAYQKIYSKALYKDFKGKAGLQNITLMMIEKEDLTPFIHLQHHQQEL
D39 KVELAEVLKGQEILAYQKIYSKTLDKDFKGKASLQNITLMMIEKEDLTPFIHLQHHQQEL
D39V KVELAEVLKGQEILAYQKIYSKTLDKDFKGKASLQNITLMMIEKEDLTPFIHLQHHQQEL
Hungary19A-6 KVELAEVLKGQEILAYQKIYSKTLDKDFKGKAGLQNITLMMIEKEDLTPFIHLQHHQQEL
EF3030 KVELAEVLKGQEILAYQKIYSKTLDKDFKGKAGLQNITLMMIEKEDLTPFIHLQHHQQEL
**********************:* *******.***************************
TIGR4 TLKDGIVITAKLAQLAGVKVGQTLEIEGKELKVVAITENYVGHFIYMSQASYEQLYGQLP
D39 TLKDGIVITAKLAQLAGVKVGQTLEIEGKELKVAAITENYVGHFIYMSQASYEQLYGQLP
D39V TLKDGIVITAKLAQLAGVKVGQTLEIEGKELKVAAITENYVGHFIYMSQASYEQLYGQLP
Hungary19A-6 TLKDGIVITAKLAQLAGVKVGQTLEIEGKELKVAAITENYVGHFIYMSQASYEQLYGQLP
EF3030 TLKDGIVITAKLAQLAGVKVGQTLEIEGKELKVAAITENYVGHFIYMSQASYEQLYGQLP
*********************************.**************************
TIGR4 QANTYLVSLRDTSATSIESQAGLLMNQSAVSSVVQNASAIRLFDSIASSLNQTMTILVIV
D39 QANTYLVSLRDTSATSIESQAGLLMSQSAVSSVVQNASAIRLFDSVASSLNQTMTILVIV
D39V QANTYLVSLRDTSATSIESQAGLLMSQSAVSSVVQNASAIRLFDSVASSLNQTMTILVIV
Hungary19A-6 QANTYLVSLRDTSATSIESQAGLLMSQSAVSSVVQNASAIRLFDSVASSLNQTMTILVIV
EF3030 QANTYLVSLRDTSATSIESQAGLLMNQSAVSSVVQNASAIRLFDSIASSLNQTMTILVIV
*************************.*******************:**************
TIGR4 SVLLAIVILYNLTNINVAERIRELSTIKVLGFHNNEVTLYIYRETIVLSLVGIVLGLIAG
D39 SVLLAIVILYNLTNINVAERIRELSTTKVLGFHNNEVTLYIYRETIVLSLVGIVLGLVAG
D39V SVLLAIVILYNLTNINVAERIRELSTTKVLGFHNNEVTLYIYRETIVLSLVGIVLGLVAG
Hungary19A-6 SVLLAIVILYNLTNINVAERIRELSTTKVLGFHNNEVTLYIYRETIVLSLVGIVLGLVAG
EF3030 SVLLAIVILYNLTNINVAERIRELSTIKVLGFHNNEVTLYIYRETIVLSLVGIVLGLVAG
************************** ******************************:**
TIGR4 FYLHQFLIQMISPATILFYPQVGWEVYVIPVAAVSIILTLLGFFVNYYLRKVDMLEALKS
D39 FYLHQFLIQMISPATILFYPQVGWEVYVIPVAAVSIILTLLGFFVNYYLRKVDMLEALKS
D39V FYLHQFLIQMISPATILFYPQVGWEVYVIPVAAVSIILTLLGFFVNYYLRKVDMLEALKS
Hungary19A-6 FYLHQFLIQMISPATILFYPQVGWEVYVIPVAAVSIILTLLGFFVNYYLRKVDMLEALKS
EF3030 FYLHQFLIQMISPATILFYPQVGWEVYVIPVATVSIILTLLGFFVNYYLRKVDMLEALKS
********************************:***************************
TIGR4 VE
D39 VE
D39V VE
Hungary19A-6 VE
EF3030 VE
**