Jump to navigation
Jump to search
PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
⊟Summary[edit | edit source]
- pan ID?: PNEUPAN003121000
- symbol?: qsrB
- synonym:
- description?: ABC transporter permease
- ABC transporter permease
- ABC transporter membrane-spanning permease - Na+ export
- putative membrane protein
- sodium ABC transporter permease
- Na+ export ABC ABC transporter membrane-spanning permease
- ABC-2 transporter family protein
- ABC transporter, permease protein
- ABC-type Na+ efflux pump, permease component
- conserved hypothetical protein
- membrane protein, putative
- putative protein YhaP
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 3950147..3951346
- occurrence?: in 100% of 41 strains
⊟Orthologs[edit | edit source]
⊟Genome Viewer[edit | edit source]
| TIGR4 | |
| D39 | |
| D39V | |
| Hungary19A-6 | |
| EF3030 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
TIGR4 MRNMWVVIKETYLRHVESWSFFFMVISPFLFLGISVGIGHLQGSSMAKNNKVAVVTTVPS
D39 MRNMWVVIKETYLRHVESWSFFFMVISPFLFLGISVGIGHIQGSSMAKNNKVAVVTTVPS
D39V MRNMWVVIKETYLRHVESWSFFFMVISPFLFLGISVGIGHIQGSSMAKNNKVAVVTTVPS
Hungary19A-6 MRNMWVVIKETYLRHVESWSFFFMVISPFLFLGISVGIGHLQGSSMAKNNKVAVVTTVPS
EF3030 MRNMWVVIKETYLRHVKSWSFFFMVISPFLFLGISVGIGHIQGSSMAKNNKVAVVTTVPS
****************:***********************:*******************
TIGR4 VAEGLKNVNGVNFDYKDEASAKEAIKEEKLKGYLTIDQEDSVLKAVYHGETSLENGIKFE
D39 VAEGLKNVNGVNFDYKDEASAKEAIKEEKLKGYLTIDQEDSVLKAVYHGETSLENGIKFE
D39V VAEGLKNVNGVNFDYKDEASAKEAIKEEKLKGYLTIDQEDSVLKAVYHGETSLENGIKFE
Hungary19A-6 VAEGLKNVNGVNFDYKDEASAKEAIKEEKLKGYLTIDQEDSVLKAVYHGETSLENGIKFE
EF3030 VAEGLKNVNGVNFDYKDEASAKEAIKEEKLKGYLTIDQEDSVLKAVYHGETSLENGIKFE
************************************************************
TIGR4 VTGTLNELQNQLNRSTASLSQEQEKRLAQTIQFTEKIDEAKENKKFIQTIAAGALGFFLY
D39 VTGTLNELQNQLNRSTASLSQEQEKRLAQTIQFTEKIDEAKENKKFIQTIAAGALGFFLY
D39V VTGTLNELQNQLNRSTASLSQEQEKRLAQTIQFTEKIDEAKENKKFIQTIAAGALGFFLY
Hungary19A-6 VTGILNELQNQLNRSTASLSQEQEKRLAQTIQFTEKIDEVKENKKFIQTIAAGALGFFLY
EF3030 VTGTLNELQNQLNRSTASLSQEQEKRLAQTIQFTEKIDEAKENKKFIQTIAAGALGFFLY
*** ***********************************.********************
TIGR4 MILITYAGVTAQEVASEKGTKIMEVVFSSIRASHYFYARMMALFLVILTHIGIYVVGGLA
D39 MILITYAGVTAQEVASEKGTKIMEVVFSSIRASHYFYARMMALFLVILTHIGIYVVGGLA
D39V MILITYAGVTAQEVASEKGTKIMEVVFSSIRASHYFYARMMALFLVILTHIGIYVVGGLA
Hungary19A-6 MILITYAGVTAQEVASEKGTKIMEVVFSSIRASHYFYARMMALFLVILTHIGIYVVGGLA
EF3030 MILITYAGVTAQEVASEKGTKIMEVVFSSIRASHYFYARMMALFLVILTHIGIYVVGGLA
************************************************************
TIGR4 AVLLFKDLPFLAQSGILDHLGDAISLNTLLFILISLFMYVVLAAFLGSMVSRPEDSGKAL
D39 AVLLFKDLPFLAQSGILDHLGDAISLNTLLFILISLFMYVVLAAFLGSMVSRPEDSGKAL
D39V AVLLFKDLPFLAQSGILDHLGDAISLNTLLFILISLFMYVVLAAFLGSMVSRPEDSGKAL
Hungary19A-6 AVLLFKDLPFLAQSGILVHLGDAISLNTLLFILISLFMYVVLAAFLGSMVSRPEDSGKAL
EF3030 AVLLFKDLPFLAQSGILDHLGDAISLNTLLFILISLFMYVVLAAFLGSMVSRPEDSGKAL
***************** ******************************************
TIGR4 SPLMILIMGGFFGVTALGAAGDNLLLKIGSYIPFISTFFMPFRTINDYAGGAEAWISLAI
D39 SPLMILIMGGFFGVTALGAAGDNLLLKIGSYIPFISTFFMLFRTINDYAGGAEAWISLAI
D39V SPLMILIMGGFFGVTALGAAGDNLLLKIGSYIPFISTFFMLFRTINDYAGGAEAWISLAI
Hungary19A-6 SPLMILIMGGFFGVTALGAAGDNLLLKIGSYIPFISTFFMPFRTINDYAGGAEAWISLAI
EF3030 SPLMILIMGGFFGVTALGAAGDNLLLKIGSYIPFISTFFMPFRTINGYAGGAEAWISLAI
**************************************** *****.*************
TIGR4 TVIFAVVATGFIGRMYASLVLQTDDLGIWKTFKRALSYK
D39 TVIFAVVATGFIGRMYASLVLQTDDLGIWKTFKRALSYK
D39V TVIFAVVATGFIGRMYASLVLQTDDLGIWKTFKRALSYK
Hungary19A-6 TVIFAVVATGFIGRMYASLVLQTDDLGIWKTFKRALSYK
EF3030 TVIFAVVATGFIGRMYASLVLQTDDLGIWKTFKRALSYK
***************************************