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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
⊟Summary[edit | edit source]
- pan ID?: PNEUPAN003609000
- symbol?: rnmV
- synonym:
- description?: ribonuclease M5
- ribonuclease M5
- Conserved hypothetical protein
- putative primase homolog
- primase-related protein
- DNA primase
- putative primase like protein
- primase
- primase homolog
- putative primase
- Small primase-like proteins (Toprim domain)
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 4737829..4738389
- occurrence?: in 100% of 43 strains
⊟Orthologs[edit | edit source]
SPN034183:
SPN034183_RS09600 (rnmV)
SPN994038:
SPN994038_RS09505 (rnmV)
SPN994039:
SPN994039_RS09510 (rnmV)
⊟Genome Viewer[edit | edit source]
| TIGR4 | |
| D39 | |
| D39V | |
| Hungary19A-6 | |
| EF3030 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
TIGR4 MKEKISQVIVVEGRDDTVNLKRYFDVETYETRGSAINAQDIERIQRLHQRHGVIVFTDPD
D39 MKERISQVIVVEGRDDTVNLKRYFDVETYETRGSAINDQDIERIQRLHQRHGVIVFTDPD
D39V MKERISQVIVVEGRDDTVNLKRYFDVETYETRGSAINDQDIERIQRLHQRHGVIVFTDPD
Hungary19A-6 MKERISQVIVVEGRDDTVNLKRYFDVETYETRGSAINDQDIERIQRLHQRHGVIVFTDPD
EF3030 MKEKISQVIVVEGRDDTVNLKRYFDVETYETRGSAINAQDIERIQRLHQRHGVIVFTDPD
***:********************************* **********************
TIGR4 FNGERIRRMIMMVIPTVQHAFLKRDEAVPKSKTKGRSLGIEHASYEDLKTALAQVTEQFE
D39 FNGERIRRMIMTAIPTVQHAFLKRDEAVPKSKTKGRSLGIEHASYEDLKTALAQVTEQFE
D39V FNGERIRRMIMTAIPTVQHAFLKRDEAVPKSKTKGRSLGIEHASYEDLKTALAQVTEQFE
Hungary19A-6 FNGERIRRMIMTAIPTVQHAFLKRDEAVPKSKTKGRSLGIEHASYEDLKTALAQVTEQFE
EF3030 FNGERIRRMIMTVIPTVQHAFLKRDEAVPKSKTKGRSLGIEHASYEDLKTALAQVTEQFE
*********** .***********************************************
TIGR4 HESQFDISRSDLIRLGFLAGADSRKRREYLGETLRIGYSNGKQLLKRLELFGVTLAEVEE
D39 HESQFDISRSDLIRLGFLAGADSRKRREYLGETLRIGYSNGKQLLKRLELFGVTLAEVEE
D39V HESQFDISRSDLIRLGFLAGADSRKRREYLGETLRIGYSNGKQLLKRLELFGVTLAEVEE
Hungary19A-6 HESQFDISRSDLIRLGFLAGADSRKRREYLGETLRIGYSNGKQLLKRLELFGVTLAEVEE
EF3030 HESQFDISRSDLIRLGFLAGADSRKRREYLGETLRIGYSNGKQLLKRLELFGVTLAEVEE
************************************************************
TIGR4 AMKSYE
D39 AMKSYE
D39V AMKSYE
Hungary19A-6 AMKSYE
EF3030 AMKSYE
******