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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 15-DEC-2024
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae 670-6B
- locus tag: SP670_RS10415 [old locus tag: SP670_2068 ]
- pan locus tag?: PNEUPAN003609000
- symbol: rnmV
- pan gene symbol?: rnmV
- synonym:
- product: ribonuclease M5
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SP670_RS10415 [old locus tag: SP670_2068 ]
- symbol: rnmV
- product: ribonuclease M5
- replicon: chromosome
- strand: -
- coordinates: 1931430..1931990
- length: 561
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Location: NC_014498 (1931430..1931990) NCBI
- BioCyc: SP670_RS10415 BioCyc
- MicrobesOnline:
- PneumoBrowse for strain D39V: SPV_1787 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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541ATGAAAGAGAAAATTTCCCAAGTTATCGTGGTTGAAGGTCGCGATGATACGGTCAATCTC
AAGCGTTATTTCGATGTGGAGACCTATGAGACACGAGGTTCTGCCATCAATGATCAGGAT
ATAGAGCGGATTCAGCGCCTGCACCAACGTCATGGAGTCATTGTCTTTACAGACCCAGAT
TTTAATGGGGAGCGGATTCGGCGCATGATTATGACGGCCATTCCAACAGTTCAGCATGCC
TTTCTCAAGCGAGATGAAGCTGTTCCCAAGTCCAAGACCAAGGGGCGTTCTCTGGGAATT
GAGCATGCCAGCTATGAAGACCTGAAAACGGCTCTAGCTCAGGTGACAGAACAATTTGAA
CATGAGAGTCAGTTTGACATTAGTCGTAGCGACTTGATTCGCCTTGGTTTTCTAGCAGGG
GCAGACAGCCGTAAGCGTAGAGAATATCTCGGAGAGACTCTCCGAATCGGCTATTCTAAC
GGCAAGCAACTCCTCAAACGCCTAGAGTTGTTTGGGGTTACTTTGGCAGAAGTGGAAGAA
GCTATGAAATCTTATGAGTAG60
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561
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SP670_RS10415 [old locus tag: SP670_2068 ]
- symbol: RnmV
- description: ribonuclease M5
- length: 186
- theoretical pI: 7.09573
- theoretical MW: 21477.2
- GRAVY: -0.603226
⊟Function[edit | edit source]
- reaction: EC 3.1.26.8? ExPASyRibonuclease M5 Endonucleolytic cleavage of RNA, removing 21 and 42 nucleotides, respectively, from the 5'- and 3'-termini of a 5S-rRNA precursor
- TIGRFAM: Transcription RNA processing ribonuclease M5 (TIGR00334; EC 3.1.26.8; HMM-score: 161.2)
- TheSEED: see SP670_2068
- PFAM: no clan defined DUF4093; Domain of unknown function (DUF4093) (PF13331; HMM-score: 98.1)and 3 moreToprim-like (CL0413) Toprim_4; Toprim domain (PF13662; HMM-score: 30)Toprim; Toprim domain (PF01751; HMM-score: 25.9)Cupin (CL0029) TauD; Taurine catabolism dioxygenase TauD, TfdA family (PF02668; HMM-score: 15.9)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.003809
- TAT(Tat/SPI): 0.000426
- LIPO(Sec/SPII): 0.000628
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: WP_000660009 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MKEKISQVIVVEGRDDTVNLKRYFDVETYETRGSAINDQDIERIQRLHQRHGVIVFTDPDFNGERIRRMIMTAIPTVQHAFLKRDEAVPKSKTKGRSLGIEHASYEDLKTALAQVTEQFEHESQFDISRSDLIRLGFLAGADSRKRREYLGETLRIGYSNGKQLLKRLELFGVTLAEVEEAMKSYE
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_1787 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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