PangenomeTIGR4

serotype 4

D39

serotype 2

D39V

serotype 2

Hungary19A-6

serotype 19A

EF3030

serotype 19F

670-6B

serotype 6B

6A-10

serotype 6A

70585

serotype 5

A026

serotype 19F

A66

serotype 3

AP200

serotype 11A

ASP0581

serotype 12F

ATCC 49619

serotype 19F

ATCC 700669

serotype 23F

BM6001

serotype 19F

BVJ1JL

serotype 1

CGSP14

serotype 14

G54

serotype 19F

HU-OH

serotype 3

Hu15

serotype 19A

Hu17

serotype 19A

INV104

serotype 1

INV200

serotype 14

JJA

serotype 14

MDRSPN001

serotype 19F

NCTC7465

serotype 1

NCTC7466

serotype 2

NU83127

serotype 4

OXC141

serotype 3

P1031

serotype 1

R6

serotype 2

SP49

serotype 19A

SPN032672

serotype 1

SPN034156

serotype 3

SPN034183

serotype 3

SPN994038

serotype 3

SPN994039

serotype 3

SPNA45

serotype 3

ST556

serotype 19F

TCH8431/19A

serotype 19A

Taiwan19F-14

serotype 19F

Xen35

serotype 4

gamPNI0373

serotype 1

⊟Summary

• pan ID^?: PNEUPAN003741000
• symbol^?: patA
• synonym:
• description^?: multidrug efflux ABC transporter subunit PatA

  descriptions from strain specific annotations:

  • multidrug efflux ABC transporter subunit PatA
  • ABC transporter, ATP-binding/permease protein
  • ABC transporter ATP-binding membrane protein
  • multidrug ABC transporter ATP-binding protein
  • putative ABC transporter ATP-binding protein
  • ABC transporter ATP-binding protein/permease
  • ABC transporter, ATP-binding protein
  • ABC transporter ATP-binding/membrane spanning protein - unknown substrate
  • ABC transporter ATP-binding/permease protein
  • ABC transporter ATP-binding protein
  • ABC transporter family protein
  • ABC-type multidrug transport system, ATPase and permease component
  • Lipid A export ATP-binding/permease protein MsbA
  • Multidrug resistance ABC transporter ATP-binding and permease protein
• strand^?: -
• coordinates^?: 4888093..4889787
• occurrence^?: in 100% of 43 strains

⊟Orthologs

(4)^?
TIGR4:
SP_RS10570 (patA)
(2)
D39:
SPD_RS10085 (patA)
(2)
D39V:
SPV_RS10085 (patA)
(19A)
Hungary19A-6:
SPH_RS11085 (patA)
(19F)
EF3030:
EF3030_RS10240 (patA)
(6B)^?
670-6B:
SP670_RS11280 (patA)
(6A)
6A-10:
HKM25_RS10570 (patA)
(5)
70585:
SP70585_RS10830 (patA)
(19F)
A026:
T308_RS10110 (patA)
(3)
A66:
A66_RS09450 (patA)
(11A)
AP200:
SPAP_RS10505 (patA)
(12F)
ASP0581:
EL334_RS10835 (patA)
(19F)
ATCC 49619:
EL263_RS10375 (patA)
(23F)
ATCC 700669:
SPN23F_RS10820 (patA)
(19F)
BM6001:
ODS73_RS11200 (patA)
(1)
BVJ1JL:
JN057_RS10240 (patA)
(14)
CGSP14:
SPCG_RS10825 (patA)
(19F)
G54:
SPG_RS10070 (patA)
(1)
gamPNI0373:
HMPREF1038_RS10250 (patA)
(3)
HU-OH:
EL271_RS10370 (patA)
(19A)
Hu15:
SPNHU15_RS09995 (patA)
(19A)
Hu17:
SPNHU17_RS09985 (patA)
(1)
INV104:
INV104_RS10505 (patA)
(14)
INV200:
SPNINV200_RS10250 (patA)
(14)
JJA:
SPJ_RS10405 (patA)
(19F)
MDRSPN001:
MDRSPN_RS09930 (patA)
(1)
NCTC7465:
AT689_RS03500 (patA)
(2)
NCTC7466:
DQM66_RS10080 (patA)
(4)
NU83127:
EL277_RS10770 (patA)
(3)
OXC141:
SPNOXC_RS10160 (patA)
(1)
P1031:
SPP_RS10495 (patA)
(2)
R6:
SPR_RS09620 (patA)
(19A)
SP49:
BMJ42_RS11335 (patA)
(1)
SPN032672:
SPN032672_RS05340 (patA)
(3)
SPN034156:
SPN034156_RS05165 (patA)
(3)
SPN034183:
SPN034183_RS10175 (patA)
(3)
SPN994038:
SPN994038_RS10085 (patA)
(3)
SPN994039:
SPN994039_RS10090 (patA)
(3)
SPNA45:
SPNA45_RS00740 (patA)
(19F)
ST556:
MYY_RS10530 (patA)
(19F)
Taiwan19F-14:
SPT_RS10330 (patA)
(19A)
TCH8431/19A:
HMPREF0837_RS00450 (patA)
(4)
Xen35:
CXP32_RS10710 (patA)

⊟Genome Viewer

TIGR4
D39
D39V
Hungary19A-6
EF3030

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
  
  
  TIGR4           MLIQKIKTYKWQALASLLMTGLMVASSLLQPRYLQEVLGALLTGKYEAIYSIGAWLIGVA
  D39             MLIQKIKTYKWQALASLLMTGLMVASSLLQPRYLQEVLGALLTGKYEVIYSIGAWLIGVA
  D39V            MLIQKIKTYKWQALASLLMTGLMVASSLLQPRYLQEVLGALLTGKYEVIYSIGAWLIGVA
  Hungary19A-6    MLIQKIKTYKWQALASLLMTGLMVASSLLQPRYLQEVLGALLTGKYEAIYSIGAWLIGVA
  EF3030          MLIQKIKTYKWQALASLLMTGLMVASSLLQPRYLQEVLDALLTGKYEAIYSIGAWLIGVA
                  **************************************.********.************
  
  TIGR4           VVGLVAGGLNVVLAAYIAQGVSSDLREDAFRKIQTFSYADIEQFNAGNLVVRMTNDINQI
  D39             VVGLVAGGLNVVLAAYIAQGVSSDLREDAFRKIQTFSYADIEQFNAGNLVVRMTNDINQI
  D39V            VVGLVAGGLNVVLAAYIAQGVSSDLREDAFRKIQTFSYADIEQFNAGNLVVRMTNDINQI
  Hungary19A-6    VIGLVAGGLNVVLAAYIAQGVSSDLREDAFRKIQTFSYADIEQFNAGNLVVRMTNDINQI
  EF3030          VVGLVAGGLNVVLAAYIAQGVSSDLREDAFRKIQTFSYADIEQFNAGNLVVRMTNDINQI
                  *:**********************************************************
  
  TIGR4           QNVVMMTFQILFRLPLLFIGSFILAVQTLPSLWWVIVLMVVLIFGLTAVMMGMMGPRFAK
  D39             QNVVMMTFQILFRLPLLFIGSFILAVQTLPSLWWVIVLMVVLIFGLTAVMMGMMGPRFAK
  D39V            QNVVMMTFQILFRLPLLFIGSFILAVQTLPSLWWVIVLMVVLIFGLTAVMMGMMGPRFAK
  Hungary19A-6    QNVVMMTFQILFRLPLLFIGSFILAVQTLPSLWWVIVLMVVLIFGLTAVMMGMMGPRFAK
  EF3030          QNVVMMTFQILFRLPLLFIGSFILAVQTLPSLWWVIVLMVVLIFGLTAVMMGMMGPRFAK
                  ************************************************************
  
  TIGR4           FQTLLERINAIAKENLRGVRVVKSFVQEKEQFAKFTEVSDELLGQNLYIGYAFSVVEPFM
  D39             FQTLLERINAIAKENLRGVRVVKSFVQEKEQFAKFTEVSDELLGQNLYIGYAFSVVEPFM
  D39V            FQTLLERINAIAKENLRGVRVVKSFVQEKEQFAKFTEVSDELLGQNLYIGYAFSVVEPFM
  Hungary19A-6    FQTLLERINAIAKENLRGVRVVKSFVQEKEQFAKFTDVSDELLGQNLYIGYAFSVVEPFM
  EF3030          FQTLLERINAIAKENLRGVRVVKSFVQEKEQFAKFTEVSDELLGQNLYIGYAFSVVEPFM
                  ************************************:***********************
  
  TIGR4           MLVGYGAVFLSIWLVAGMVQSDPSVVGSIASFVNYLSQIIFTIVMVGFLGNSVSRAMISM
  D39             MLVGYGAVFLSIWLVAGMVQSDPSVVGSIASFVNYLSQIIFTIVMVGFLGNSVSRAMISM
  D39V            MLVGYGAVFLSIWLVAGMVQSDPSVVGSIASFVNYLSQIIFTIVMVGFLGNSVSRAMISM
  Hungary19A-6    MLVGYGAVFLSIWLVAGMVQSDPSVVGSIASFVNYLSQIIFTIVMVGFLGNSVSRAMISM
  EF3030          MLVGYGAVFLSIWLVAGMVQSDPSVVGSIASFVNYLSQIIFTIVMVGFLGNSVSRAMISM
                  ************************************************************
  
  TIGR4           RRIREILDAEPAMTFKDIPDEELVGSLSFENVTFTYPMDKEPMLKDVSFTIEPGQMVGVV
  D39             RRIREILDAEPAMTFKDIPDEELVGSLSFENVTFTYPMDKEPMLKDVSFTIEPGQMVGVV
  D39V            RRIREILDAEPAMTFKDIPDEELVGSLSFENVTFTYPMDKEPMLKDVSFTIEPGQMVGVV
  Hungary19A-6    RRIREILDAEPAMTFKDIPDEELVGSLSFENVTFTYPMDKEPMLKDVSFTIEPGQMVGVV
  EF3030          RRIREILDAEPAMTFKDIPDEELVGSLSFENVTFTYPMDKEPMLKDVSFTIEPGQMVGVV
                  ************************************************************
  
  TIGR4           GATGAGKSTLAQLIPRLFDPQDGAIKIGGKDIREVSEGTLRKTVSIVLQRAILFSGTIAD
  D39             GATGAGKSTLAQLIPRLFDPQDGAIKIGGKDIREVSEGTLRKTVSIVLQRAILFSGTIAD
  D39V            GATGAGKSTLAQLIPRLFDPQDGAIKIGGKDIREVSEGTLRKTVSIVLQRAILFSGTIAD
  Hungary19A-6    GATGAGKSTLAQLIPRLFDPQDGAIKIGGKDIREVSEGTLRKTVSIVLQRAILFSGTIAD
  EF3030          GATGAGKSTLAQLIPRLFDPQEGAIKIGGKDIREVSEGTLRKTVSIVLQRAILFSGTIAD
                  *********************:**************************************
  
  TIGR4           NLRQGKGNATLFEMERAANIAQASEFIHRMEKTFESPVEERGTNFSGGQKQRMSIARGIV
  D39             NLRQGKGNATLFEMERAANIAQASEFIHRMEKTFESPVEERGTNFSGGQKQRMSIARGIV
  D39V            NLRQGKGNATLFEMERAANIAQASEFIHRMEKTFESPVEERGTNFSGGQKQRMSIARGIV
  Hungary19A-6    NLRQGKGNATLFEMERAANIAQASEFIHRMEKTFESPVEERGTNFSGGQKQRMSIARGIV
  EF3030          NLRQGKGNATLFEMERAANIAQASEFIHRMEKTFESPVEERGTNFSGGQKQRMSIARGIV
                  ************************************************************
  
  TIGR4           SNPRILIFDDSTSALDAKSERLVQEALNKDLKGTTTIIIAQKISSVVHADKILVLNQGRL
  D39             SNPRILIFDDSTSALDAKSERLVQEALNKDLKGTTTIIIAQKISSVVHADKILVLNQGRL
  D39V            SNPRILIFDDSTSALDAKSERLVQEALNKDLKGTTTIIIAQKISSVVHADKILVLNQGRL
  Hungary19A-6    SNPRILIFDDSTSALDAKSERLVQEALNKDLKGTTTIIIAQKISSVVHADKILVLNQGRL
  EF3030          SNPRILIFDDSTSALDAKSERLVQEALNKDLKGTTTIIIAQKISSVVHADKILVLNQGRL
                  ************************************************************
  
  TIGR4           IGQGTHADLVANNAVYREIYETQK
  D39             IGQGTHADLVANNAVYREIYETQK
  D39V            IGQGTHADLVANNAVYREIYETQK
  Hungary19A-6    IGQGTHADLVANNAVYREIYETQK
  EF3030          IGQGTHADLVANNAVYREIYETQK
                  ************************