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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
⊟Summary[edit | edit source]
- pan ID?: PNEUPAN003876000
- symbol?: ltrA
- synonym:
- description?: group II intron reverse transcriptase/maturase
- group II intron reverse transcriptase/maturase
- GBSi1, group II intron, maturase
- putative reverse transcriptase-Group II intron
- group II intron, maturase-specific domain protein
- Group II intron-encoded protein LtrA
- Transposase, uncharacterized, truncation
- Group II intron maturase
- maturase
- putative group II intron protein
- putative reverse transcriptase-Group II intron (pseudogene)
- reverse transcriptase/maturase%2C group FT II introns
- reverse transcriptase/maturase, group FT II intron
- pseudogene
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 5152367..5153757
- occurrence?: in 93% of 43 strains
⊟Orthologs[edit | edit source]
(12F)
ASP0581:
EL334_RS11380 (ltrA)
(19F)
ATCC 49619:
EL263_RS10925 (ltrA)
(23F)
ATCC 700669:
SPN23F_RS14035 (ltrA)
(14)
INV200:
SPNINV200_RS10775 (ltrA)
(14)
JJA:
SPJ_RS10930 (ltrA)
(19F)
MDRSPN001:
MDRSPN_RS10460 (ltrA)
(19A)
SP49:
BMJ42_RS11885 (ltrA)
(1)
SPN032672:
SPN032672_RS04805 (ltrA)
(3)
SPN034156:
SPN034156_RS05660 (ltrA)
(3)
SPN034183:
SPN034183_RS10675 (ltrA)
(3)
SPN994038:
SPN994038_RS10590 (ltrA)
(3)
SPN994039:
SPN994039_RS10595 (ltrA)
⊟Genome Viewer[edit | edit source]
| TIGR4 | |
| D39 | |
| D39V | |
| Hungary19A-6 | |
| EF3030 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
Hungary19A-6 MSKLLDKILSRENMLEAYNQVKSNKGSAGIDGMTIEEMDNYLRQNWRLTKELIKQRKYKP
EF3030 MSKLLDKILSRENMLEAYNQVKSNKGSAGIDGMTIEEMDNYLRQNWRLTKELIKQRKYKP
************************************************************
Hungary19A-6 QPVLKVEIPKPDGGIRQLGIPTVMDRMIQQAIVQVISPICEPHFSDMSYGFRPNRSCEKA
EF3030 QPVLKVEIPKPDGGIRQLGIPTVMDRMIQQAIVQVMSPICEPHFSDTSYGFRPNRSCEKA
***********************************:********** *************
Hungary19A-6 IMKFLEYLNDGYEWIVDIDLEKFFDTVPQDRLMSLVHNIIEDGDTESLIRKYLHSGVIIN
EF3030 IMKLLEYLNDGYEWIVDIDLEKFFDTVPQDRLMSLVHNIIEDGDTESLIRKYLHSGVIIN
***:********************************************************
Hungary19A-6 GQRHKTLVGTPQGGNLSPLLSNVMLNELDKELEKRGLRFVRYADDCVITVGSEAAAKRVM
EF3030 GQRYKTLVGTPQGGNLSPLLSNIMLNELDKELEKRGLRFVRYADDCVITVGSEAASKRVM
***:******************:********************************:****
Hungary19A-6 YSASRFIEKRLGLKVNMTKAKITRPRELKYLGFGFWKSSDGWKSRPHQDSVRRFKLKLKK
EF3030 YSVSRFIEKRLGLKVNMTKTKITRPRELKYLGFGFWKSSDGWKSRPHQDSVRRFKFKLKK
**.****************:***********************************:****
Hungary19A-6 LTQRKWSIDLTRRIEQLNLSIRGWINYFSLGNMKRIVASIDERLRTRLRVIIWKQWKKKS
EF3030 LTQRKWSIDLTRRIEQLNLSIRGWINYFSLGNMKSIVASIDERLRTRLRVIIWKQWKKKS
********************************** *************************
Hungary19A-6 RRLWGLLKLGVPKWIADKVSGWGDHYQLVAQKSVLKRAISKPVLEKRGLVSCLDYYLERH
EF3030 RRLWGLLKLGVPKWIADKVSGWGDHYQLVAQKSVLKRAISKPVLEKRGLVSCLDYYLERH
************************************************************
Hungary19A-6 ALKVS
EF3030 ALKVS
*****