PangenomeTIGR4

serotype 4

D39

serotype 2

D39V

serotype 2

Hungary19A-6

serotype 19A

EF3030

serotype 19F

670-6B

serotype 6B

6A-10

serotype 6A

70585

serotype 5

A026

serotype 19F

A66

serotype 3

AP200

serotype 11A

ASP0581

serotype 12F

ATCC 49619

serotype 19F

ATCC 700669

serotype 23F

BM6001

serotype 19F

BVJ1JL

serotype 1

CGSP14

serotype 14

G54

serotype 19F

HU-OH

serotype 3

Hu15

serotype 19A

Hu17

serotype 19A

INV104

serotype 1

INV200

serotype 14

JJA

serotype 14

MDRSPN001

serotype 19F

NCTC7465

serotype 1

NCTC7466

serotype 2

NU83127

serotype 4

OXC141

serotype 3

P1031

serotype 1

R6

serotype 2

SP49

serotype 19A

SPN032672

serotype 1

SPN034156

serotype 3

SPN034183

serotype 3

SPN994038

serotype 3

SPN994039

serotype 3

SPNA45

serotype 3

ST556

serotype 19F

TCH8431/19A

serotype 19A

Taiwan19F-14

serotype 19F

Xen35

serotype 4

gamPNI0373

serotype 1

⊟Summary

• pan ID^?: PNEUPAN003885000
• symbol^?: dusB
• synonym:
• description^?: tRNA dihydrouridine synthase DusB

  descriptions from strain specific annotations:

  • tRNA dihydrouridine synthase DusB
  • putative tRNA-dihydrouridine synthase
  • tRNA-dihydrouridine synthase B
  • tRNA-dihydrouridine synthase
  • NifR3 family TIM-barrel protein
  • Conserved hypothetical protein
  • Dihydrouridine synthase (Dus)
  • putative TIM-barrel protein, NifR3 family
  • TIM-barrel, nifR3 family protein
  • TIM barrel oxidoreductase NifR3
  • TIM-barrel protein, nifR3 family
  • TIM-barrel protein, nifR3 family protein, putative
  • TIM-barrel protein, putative, NifR3 family
  • pseudogene
• strand^?: +
• coordinates^?: 5163636..5164617
• occurrence^?: in 100% of 43 strains

⊟Orthologs

(4)^?
TIGR4:
SP_RS11180 (dusB)
(2)
D39:
SPD_RS10665 (dusB)
(2)
D39V:
SPV_RS10665 (dusB)
(19A)
Hungary19A-6:
SPH_RS11665 (dusB)
(19F)
EF3030:
EF3030_RS10820 (dusB)
(6B)^?
670-6B:
SP670_RS11850 (dusB)
(6A)
6A-10:
HKM25_RS11125 (dusB)
(5)
70585:
SP70585_RS11485 (dusB)
(19F)
A026:
T308_RS10685 (dusB)
(3)
A66:
A66_RS09975 (dusB)
(11A)
AP200:
SPAP_RS11040 (dusB)
(12F)
ASP0581:
EL334_RS11430 (dusB)
(19F)
ATCC 49619:
EL263_RS10975 (dusB)
(23F)
ATCC 700669:
SPN23F_RS11415 (dusB)
(19F)
BM6001:
ODS73_RS11750 (dusB)
(1)
BVJ1JL:
JN057_RS10775 (dusB)
(14)
CGSP14:
SPCG_RS11400 (dusB)
(19F)
G54:
SPG_RS10635 (dusB)
(1)
gamPNI0373:
HMPREF1038_RS10805 (dusB)
(3)
HU-OH:
EL271_RS10935 (dusB)
(19A)
Hu15:
SPNHU15_RS10525 (dusB)
(19A)
Hu17:
SPNHU17_RS10505 (dusB)
(1)
INV104:
INV104_RS11070 (dusB)
(14)
INV200:
SPNINV200_RS10815 (dusB)
(14)
JJA:
SPJ_RS10970 (dusB)
(19F)
MDRSPN001:
MDRSPN_RS10515 (dusB)
(1)
NCTC7465:
AT689_RS02945 (dusB)
(2)
NCTC7466:
DQM66_RS10660 (dusB)
(4)
NU83127:
EL277_RS11375 (dusB)
(3)
OXC141:
SPNOXC_RS10700 (dusB)
(1)
P1031:
SPP_RS11045 (dusB)
(2)
R6:
SPR_RS10160 (dusB)
(19A)
SP49:
BMJ42_RS11930 (dusB)
(1)
SPN032672:
SPN032672_RS04760 (dusB)
(3)
SPN034156:
SPN034156_RS05700 (dusB)
(3)
SPN034183:
SPN034183_RS10715 (dusB)
(3)
SPN994038:
SPN994038_RS10630 (dusB)
(3)
SPN994039:
SPN994039_RS10635 (dusB)
(3)
SPNA45:
SPNA45_RS11315 (dusB)
(19F)
ST556:
MYY_RS11110 (dusB)
(19F)
Taiwan19F-14:
SPT_RS10900 (dusB)
(19A)
TCH8431/19A:
HMPREF0837_RS01015 (dusB)
(4)
Xen35:
CXP32_RS11325 (dusB)

⊟Genome Viewer

TIGR4
D39
D39V
Hungary19A-6
EF3030

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
  
  
  TIGR4           MTNLNTPFMIGNIEIPNRTVLAPMAGVTNSAFRTIAKELGAGLVVMEMVSDKGIQYNNEK
  D39             MTNLNTPFMIGNIEIPNRTVLAPMAGVTNSAFRTIAKELGAGLVVMEMVSDKGIQYNNEK
  D39V            MTNLNTPFMIGNIEIPNRTVLAPMAGVTNSAFRTIAKELGAGLVVMEMVSDKGIQYNNEK
  Hungary19A-6    MTNLNTPFMIGNVEIPNRTVLAPMAGVTNSAFRTIAKELGAGLVVMEMVSDKGIQYNNEK
  EF3030          MTNLNTPFMIGNVEIPNRTVLAPMAGVTNSAFRTIAKELGAGLVVMEMVSDKGIQYNNEK
                  ************:***********************************************
  
  TIGR4           TLHMLHIDEGENPVSIQLFGSDEDSLARAAEFIQENTKTDIVDINMGCPVNKIVKNEAGA
  D39             TLHMLHIDEGENPVSIQLFGSDEDSLARAAEFIQENTKTDIVDINMGCPVNKIVKNEAGA
  D39V            TLHMLHIDEGENPVSIQLFGSDEDSLARAAEFIQENTKTDIVDINMGCPVNKIVKNEAGA
  Hungary19A-6    TLHMLHIDEGENPVSIQLFGSDEDSLARAAEFIQENTKTDIVDINMGCPVNKIVKNEAGA
  EF3030          TLHMLHIDEGENPVSIQLFGSDEDSLARAAEFIQENTKTDIVDINMGCPVNKIVKNEAGA
                  ************************************************************
  
  TIGR4           MWLKDPDKIYSIINKVQSVLDIPLTVKMRTGWADPSLAVENALAAEAAGVSALAMHGRTR
  D39             MWLKDPDKIYSIINKVQSVLDIPLTVKMRTGWADPSLAVENALAAEAAGVSALAMHGRTR
  D39V            MWLKDPDKIYSIINKVQSVLDIPLTVKMRTGWADPSLAVENALAAEAAGVSALAMHGRTR
  Hungary19A-6    MWLKDPDKIYSIINKVQSVLDIPLTVKMRTGWADPSLAVENALAAEAAGVSALAMHGRTR
  EF3030          MWLKDPDKIYSIINKVQSVLDIPLTVKMRTGWADPSLAVENALAAEAAGVSALAMHGRTR
                  ************************************************************
  
  TIGR4           EQMYTGHADLETLYKVAQALTKIPFIANGDIRTVQEAKQRIEEVGADAVMIGRAAMGNPY
  D39             EQMYTGHADLETLYKVAQALTKIPFIANGDIRTVQEAKQRIEEVGADAVMIGRAAMGNPY
  D39V            EQMYTGHADLETLYKVAQALTKIPFIANGDIRTVQEAKQRIEEVGADAVMIGRAAMGNPY
  Hungary19A-6    EQMYTGHADLETLYKVAQALTKIPFIANGDIRTVQEAKQRIEEVGADAVMIGRAAMGNPY
  EF3030          EQMYTGHADLETLYKVAQALTKIPFIANGDIRTVQEAKQRIEEVGADAVMIGRAAMGNPY
                  ************************************************************
  
  TIGR4           LFNQINHYFETGEILPDLTFEDKMKIAYEHLKRLINLKGENVAVREFRGLAPHYLRGTSG
  D39             LFNQINHYFETGEILPDLTFEDKMKIAYEHLKRLINLKGENVAVREFRGLAPHYLRGTSG
  D39V            LFNQINHYFETGEILPDLTFEDKMKIAYEHLKRLINLKGENVAVREFRGLAPHYLRGTSG
  Hungary19A-6    LFNQINHYFETGEILPDLTFEDKMKIAYEHLKRLINLKGENVAVREFRGLAPHYLRGTSG
  EF3030          LFNQINHYFETGEILPDLTFEDKMKIAYEHLKRLINLKGENVAVREFRGLAPHYLRGTSG
                  ************************************************************
  
  TIGR4           AAKLRGAISQASTLAEIETLLQLEKA
  D39             AAKLRGAISQASTLAEIEALLQLEKA
  D39V            AAKLRGAISQASTLAEIEALLQLEKA
  Hungary19A-6    AAKLRGAISQASTLAEIEALLQLEKV
  EF3030          AAKLRGAISQASTLAEIEALLQLEKV
                  ******************:******.