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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 31-JAN-2014
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae 670-6B
- locus tag: SP670_0273 [new locus tag: SP670_RS01365 ]
- pan locus tag?: PNEUPAN000926000
- symbol: SP670_0273
- pan gene symbol?: —
- synonym:
- product: conserved hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SP670_0273 [new locus tag: SP670_RS01365 ]
- symbol: SP670_0273
- product: conserved hypothetical protein
- replicon: chromosome
- strand: +
- coordinates: 240955..241512
- length: 558
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: CP002176 (240955..241512) NCBI
- BioCyc: see SP670_RS01365
- MicrobesOnline:
- PneumoBrowse for strain D39V: SPV_0184 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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541TTGACCCCCTTGTTTGAACTTGTTATACTAGGGGAATTGCTGGTTAGAGAAAATTTCTCT
AAATTGGTAGCAGAAAGGAAATTCATCATGAAATTAAAAAGATTCACACTTTCTCTTGCT
TCTCTAGCAAGTTTTAGTCTCTTAGTAGCTTGTTCACAAAGAGCTCAACAGGTTCAACAG
CCTGTTGCTCAGCAGCAGGTCCAACAGCCTGCTCAACAACCTGCTCAACAGAATACCAAT
ACTGCAAATGCAGGAGGTAACCAAAATCAAGCGGCTCCAGTACAAAACCAACCTGTTGCT
CAACCGACCGATATTGATGGGACTTATACTGGTCAGGATGACGGAGACCGTATCACTTTA
GTGGTAACTGGAACGACTGGTACATGGACTGAGCTCGAATCTGACGGGGATCAGACAGTC
AAACAGGTTACATTTGATTCAGCAAATCAACGCATGATTATTGGCGATGATGTCAAAATT
TACACTGTAAACGGTAATCAAATCGTCGTAGATGATATGGATAGAGACCCATCGGACCAA
ATCGTTTTAACTAAATAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SP670_0273 [new locus tag: SP670_RS01365 ]
- symbol: SP670_0273
- description: conserved hypothetical protein
- length: 185
- theoretical pI: 4.27747
- theoretical MW: 20279.6
- GRAVY: -0.375135
⊟Function[edit | edit source]
- TIGRFAM: mycoides cluster lipoprotein, LppA/P72 family (TIGR03490; HMM-score: 13.7)and 1 moreProtein fate Protein and peptide secretion and trafficking membrane protein insertase, YidC/Oxa1 family, N-terminal domain (TIGR03593; HMM-score: 6.5)
- TheSEED :
- FIG01114580: hypothetical protein
- PFAM: Calycin (CL0116) DUF3642; Bacterial lipoprotein (PF12182; HMM-score: 99.4)and 2 moreGlyoxalase (CL0104) Glyoxalase_8; Glyoxalase superfamily protein (PF20066; HMM-score: 16.2)no clan defined DUF4106; Protein of unknown function (DUF4106) (PF13388; HMM-score: 7.8)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0.32
- Cytoplasmic Membrane Score: 9.55
- Cellwall Score: 0.12
- Extracellular Score: 0.01
- Internal Helices: 0
- DeepLocPro: Extracellular
- Cytoplasmic Score: 0.0014
- Cytoplasmic Membrane Score: 0.4593
- Cell wall & surface Score: 0.0042
- Extracellular Score: 0.5352
- SignalP: Signal peptide LIPO(Sec/SPII) length 50 aa
- SP(Sec/SPI): 0.059149
- TAT(Tat/SPI): 0.206095
- LIPO(Sec/SPII): 0.521958
- Cleavage Site: CS pos: 50-51. LVA-CS. Pr: 0.5382
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: ADM90350 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MTPLFELVILGELLVRENFSKLVAERKFIMKLKRFTLSLASLASFSLLVACSQRAQQVQQPVAQQQVQQPAQQPAQQNTNTANAGGNQNQAAPVQNQPVAQPTDIDGTYTGQDDGDRITLVVTGTTGTWTELESDGDQTVKQVTFDSANQRMIIGDDVKIYTVNGNQIVVDDMDRDPSDQIVLTK
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_0184 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.