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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 15-OCT-2021
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae 670-6B
- locus tag: SP670_RS03610 [old locus tag: SP670_0722 ]
- pan locus tag?: PNEUPAN001606000
- symbol: SP670_RS03610
- pan gene symbol?: zmpB
- synonym:
- product: LPXTG cell wall anchor domain-containing protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SP670_RS03610 [old locus tag: SP670_0722 ]
- symbol: SP670_RS03610
- product: LPXTG cell wall anchor domain-containing protein
- replicon: chromosome
- strand: +
- coordinates: 681651..687560
- length: 5910
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: NC_014498 (681651..687560) NCBI
- BioCyc: SP670_RS03610 BioCyc
- MicrobesOnline:
- PneumoBrowse for strain D39V: SPV_0577 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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5881GTGTTTAAAAAAGACCGTTTTTCAATTCGTAAGATTAAGGGAGTTGTAGGCTCTGTATTT
CTTGGAAGCCTTTTGATGGCTCCTTCTGTAGTGGACGCAGCCACCTATCACTATGTAAAT
AAAGAGATTATTTCACAAGAAGCTAAAGATTTAATTCAGACAGGAAAGCCTGACAGGAAT
GAAGTTGTATATGGTTTGGTGTATCAAAAAGATCAGTTGCCTCAAACAGGGACAGAAGCA
TCTGTTTTGACAGCTTTTGGTTTGCTGACTGTTGGGAGCTTGCTTTTAATCTACAAGAGA
AAGAAAATTGCTAGCGTCTTTCTAGTTGGAGCTATGGGATTGGTAGTTCTTCCTAGTGCA
GGGGCTGTAGACCCAGTTGCGACCCTAGCGCTGGCTAGTCGAGAGGGTGTTGTTGAAATG
GAGGGCTATCGCTATGTTGGTTATCTATCAGGTGACATCCTCAAAACGCTTGGCTTGGAC
ACTGTTTTAGAAGAAACCTCAGCAAAACCTGGAGAGGTGACTGTAGTCGAAGTTGAGACT
CCTCAATCAACAACAAATCAGGAGCAAGCTAGGACAGAAAACCAAGTAGTAGAGACAGAG
GAAGCACCTAAAACAGAAGAAAGTCCAAAGGAAGAACCAAAATCGGAGATAAAACCTACT
GACGACACCCTTCCTAAAGTAGAAGAGGGGAAAGAAGATTCAGCAGAACCAGCTCCAGTT
GAAGAAGTAGGTGGAGAAGTTGAGTCAAAACCAGAGGAAAAAGTAGCAGTTAAGCCAGAA
AGTCAACCATCAGACAAACCAGCTGAGGAATCAAAAGTTGAACCACCAGTAGAACAAGCA
AAAGGCCCAGAACAACCCGTGCAACCTACACAAGCTGAGCAACCAAGGATACCAAAAGAT
TCATCACAACCAGAAGATCCTAAAGAAGATAGGGGAGCGGAAGATACACCGAAACAAGAA
GATACACCGAAACAAGAAGATACACAGCCAGAAGTAGTAGAAACAAAAGATGAGGCTGCT
AATCAACCTGTTGAAGAACCAAAAGTTGAAACGCCTGCTGTAGAAAAACAAACGGAACCA
AAAGTTGAACAAGTAGGTGAACCAGTCGAGCCAAGTGAAGACGAAAAGGCACCAGTCTCT
CCAGAAAAGCAACCAGAAGCTCCTGAAGAGAAGGCTGTAGAGGAAACACCGAAACCAGAA
GATAAAATAAAGGGTATTGGTACTAAAGAACCAGTTGATAAAAGTGAGTTAAATAATCAA
ATTGATAAAGCTAGTTCAGTTTCTCCTACTGATTATTCTACAGCAAGTTACAATGCTCTT
GGACCTGTTTTAGAAACTGCAAAAGGTGTCTATGCTTCAGAGCCTGTAAAACAGCCTGAG
GTAAATAGCGAGACAAATAAACTTAAAACGGCTATTGACGCTCTAAACGTTGATAAAAGT
GAATTACAGGAACAATTAAGAGTTGCTGAACAAAAACAACAAGCTGACTATAGCGCTAAA
ACTTGGAGGGAATTCAAAATTGCTGAACTTCAAGCTAAAGAAATCAACAACCAAACTACA
CCACTTCCTAAACAAAGTGAAATAGATGCAGCTACTAAGGCTCTTCAAGACGCTCTTCAA
GCTCTTGCTGTAGATAAAACTGTATTACAAAACGCTATTAACACAGCTAATAGCAAACGT
GAAGAAGAGTATACTGCTCAGACATGGAAAGCGTTAGAAGATGCTCTTACAGCAGTGAAT
CCTGTTAATGAAGATGAAACTGCAACTCAAAGCAAAGTAGACGAAGCTACTAGAAACTTA
GAAGAAGCTATCAATAACCTAGTTCTATTAACTGAAAAACCGGTATTAACATTTATTGAG
ACTGATAAGAAAGCATTAGAACGTGAAGTAGTTGCTAAGTATTCTCTAGAAAACCAAAAT
AAAACAAAAATTAAATCAATCACAGCTACTCTGAAAAAAGGAGAAACAGTTGTTAGCACT
GTAGAGCTTATAGGCGATGATGTAACTAATGAAACTATAACCTCTGCATTTAAGAATCTA
GAGTACTACAAAGAATACACCCTATCTACAACTATGGTTTACGATAGAGGTGACGGTGAT
GTAACAGAAATCTTAGATAATCAACCAATCCAACTAGATCTTAAAAAAGTTGAGCTTAAA
AATATTAAACGTACAGATTTAATCAAATACGAAAATGGAAAAGAAACTAATGAATCACTA
ATAACAACTGTTCCTGATGATAAGCGGAATTATTATTTAAAAATAACTTCAAAGAATCAA
AAAACTACATTACTAGCTGTTAAAAATATAGAAGAAACTACGGTTAACGGAACACCTGTA
TATAAAGTTACAGCAATCGCAGACAATTTAGTCTCTAGAACTGCTGATAATAAATTTGAA
GAAGAATACGTTCACTATATTGAAAAACCTAAAGTCCACGAAGATAATGTATATTATAAC
TTCAAAGAATTAGTGGAGGCTATTCAAAACGATCCTTCAAAAGAATATCGTCTGGGACAA
TCAATGAGCGCTAGAAATGTTGTTCCTAATGGAAAATCATATATCACTAAAGAATTTACA
GGAAAACTTTTAAGTTCTGAAGGAAAACAATTTGCTATCACTGAGTTGGAACATCCATTA
TTTAATGTGATAACAAACGCAACGATAAATAATGTGAATTTTGAAAATGTAGAGATAGAA
CGTTCTGGTCAAGATAATATTGCATCATTAGCCAATACTATGAAAGGTTCTTCAGTTATT
ACAAATGTCAAAATTACAGGCACACTTTCAGGTCGTAATAATGTTGCTGGATTTGTAAAT
AATATGAATGATGGAACTCGTATTGAAAATGTTGCTTTCTTTGGCAAACTACACTCTACA
AGTGGAAATGGCTCTCATACAGGGGGAATTGCAGGTACAAACTATAGAGGAATTGTTAGA
AAAGCATATGTTGATGCTACTATTACAGGAAACAAAACACGCGCCAGCTTGTTAGTTCCT
AAAGTAGATTATGGATTAACTCTAGACCATCTTATTGGTACAAAAGCTCTCCTAACTGAG
TCGGTTGTAAAAGGTAAAATAGATGTTTCAAATCCAGTAGAAGTTGGAGCAATAGCAAGT
AAGACTTGGCCTGTAGGTACGGTAAGTAATTCTGTCAGCTATGCTAAGATTATCCGTGGA
GAGGAGTTATTCGGCTCTAACGACGTTGATGATTCTGATTATGCTAGTGCTCATATAAAA
GATTTATATGCGGTAGAGGGATATTCGTCAGGTAATAGATCATTTAGGAAATCTAAAACA
TTTACTAAATTAACTAAAGAACAAGCTGATGCTAAAGTTACTACTTTCAATATTACTGCT
GATAAATTAGAAAGTGATCTATCTCCTCTTGCAAAACTTAATGAAGAAAAAGCCTATTCT
AGTATTCAAGATTATAACGCTGAATATAACCAAGCCTATAAAAATCTTGAAAAATTAATA
CCATTCTACAATAAAGATTATATTGTATATCAAGGTAATAAATTAAATAAAGAACACCAT
CTAAATACTAAAGAAGTTCTTTCTGTTACCGCGATGAACAACAATGAGTTTATCACAAAC
CTAGATGAAGCTAATAAAATTATTGTTCACTATGCGGACGGTACAAAAGATTACTTTAAC
TTGTCTTCTAGCAGTGAAGGTTTAAGTAATGTAAAAGAATATACTATAACTGACTTAGGA
ATTAAATATACACCTAATATCGTTCAAAAAGATAACACTACTCTTGTTAATGATATAAAA
TCTATTTTAGAATCAGTAGAGCTTCAGTCTCAAACGATGTATCAGCATCTAAATCGATTA
GGTGACTATAGAGTTAATGCAATCAAAGATTTATATTTAGAAGAAAGCTTCACAGATGTT
AAAGAAAACTTAACAAACCTAATCACAAAATTAGTTCAAAACGAAGAACATCAACTAAAT
GATTCTCCAGCTGCTCGTCAAATGATTCGTGATAAAGTCGAGAAAAACAAAGCAGCTTTA
TTACTAGGTTTAACTTACCTAAATCGTTACTATGGAGTTAAATTTGGTGATGTTAATATT
AAAGAATTAATGCTATTCAAACCAGATTTCTATGGTGAAAAAGTTAGCGTATTAGACAGA
TTAATTGAAATCGGTTCTAAAGAGAACAACATTAAAGGTTCACGTACATTCGACGCATTC
GGTCAAGTATTGGCTAAATATACTAAATCAGGTAATTTAGATGCATTTTTAAATTATAAT
AGACAATTGTTCACAAATATAGACAATATGAACGATTGGTTTATTGATGCTACAGAAGAC
CATGTCTACATCGCAGAACGCGCTTCTGAGGTCGAAGAAATTAAAAATTCTAAACATCGT
GCATTCGATAATTTAAAACGAAGTCACCTTAGAAATACTATACTCCCACTACTGAATATT
GATAAAGCACATCTTTATTTAATTTCAAATTATAATGCAATTGCCTTTGGTAGTGCAGAG
CGATTAGGTAAAAAATCATTAGAAGATATTAAAGATATCGTTAACAAAGCTGCAGATGGT
TATAGAAACTATTATGATTTCTGGTATCGTCTAGCGTCTGATAACGTTAAACAACGACTA
CTAAGAGATGCTGTTATTCCTATTTGGGAAGGTTATAACGCTCCTGGTGGATGGGTTGAA
AAATATGGCCGCTATAATACCGACAAAGTATATACTCCTCTTAGAGAATTCTTTGGTCCT
ATGGATAAGTATTATAATTATAATGGAACAGGAGCTTATGCTGCTATATATCCTAACTCT
GATGATATTAGAACTGATGTAAAATATGTTCATTTAGAAATGGTTGGTGAATACGGTATT
TCAGTTTACACACATGAAACAACACACGTCAACGACCGTGCGATTTACTTAGGTGGCTTT
GGACACCGTGAAGGTACTGATGCTGAAGCATATGCTCAGGGTATGCTACAAACTCCTGTT
ACTGGTAGTGGATTTGATGAGTTTGGTTCTTTAGGTATTAATATGGTATTTAAACGCAAA
AATGATGGGAATCAGTGGTATATTACAGATCCAAAAACTCTAAAAACACGAGAAGATATT
AATAGATATATGAAGGGTTATAATGACACTTTAACTCTTCTTGATGAAATTGAGGCTGAA
TCTGTGATTTCTCAACAAAATAAAGATTTAAATAGTGCATGGTTCAAAAAAATAGATAGA
GAATACCGTGATAACAATAAATTAAATCAATGGGATAAAATTCGAAATCTAAGTCAAGAA
GAGAAAAATGAATTAAATATTCAATCTGTTAATGATTTAGTTGATCAACAATTAATGACT
AATCGCAATCCAGGTAATGGTATCTATAAACCCGAAGCAATTAGCTATAACGATCAATCA
CCTTATGTAGGTGTTAGAATGATGACCGGTATCTACGGAGGTAATACTAGTAAAGGTGCT
CCTGGAGCTGTTTCATTCAAACATAATGCTTTTAGATTATGGGGTTACTACGGATACGAA
AATGGGTTCTTAGGTTATGCTTCAAATAAATATAAACAACAATCTAAAACAGATGGTGAG
TCTGTTCTAAGTGATGAATATATTATCAAGAAAATATCTAACAATACATTTAATACTATT
GAAGAATTTAAAAAAGCTTACTTCAAAGAAGTTAAAGATAAAGCAACGAAAGGATTAACA
ACATTCGAAGTAAATGGTTCTTCCGTTTCATCATACGATGATTTACTGACATTGTTTAAA
GAAGCTGTTAAAAAAGATGCCGAAACTCTTAAACAAGAAGCAAACGGTAATAAAACAGTA
TCTATGAATAATACAGTTAAATTAAAAGAAGCTGTTTATAAGAAACTTCTTCAACAAACA
GATAGCTTTAAAACTTCAATCTTTAAATAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SP670_RS03610 [old locus tag: SP670_0722 ]
- symbol: SP670_RS03610
- description: LPXTG cell wall anchor domain-containing protein
- length: 1969
- theoretical pI: 4.88
- theoretical MW: 220496
- GRAVY: -0.651041
⊟Function[edit | edit source]
- TIGRFAM: Cell envelope Other LPXTG cell wall anchor domain (TIGR01167; HMM-score: 26.4)and 2 moreCellular processes Pathogenesis type III secretion protein, HrcV family (TIGR01399; HMM-score: 3.7)Protein fate Protein and peptide secretion and trafficking type III secretion protein, HrcV family (TIGR01399; HMM-score: 3.7)
- TheSEED: see SP670_0722
- PFAM: no clan defined Peptidase_M26_C; M26 IgA1-specific Metallo-endopeptidase C-terminal region (PF07580; HMM-score: 711)and 6 morePeptidase_M26_N; M26 IgA1-specific Metallo-endopeptidase N-terminal region (PF05342; HMM-score: 286.1)B_GA (CL0598) FIVAR; FIVAR domain (PF07554; HMM-score: 39.3)no clan defined Gram_pos_anchor; LPXTG cell wall anchor motif (PF00746; HMM-score: 30.1)Syntaxin-6_N; Syntaxin 6, N-terminal (PF09177; HMM-score: 10.8)YSIRK_signal; YSIRK type signal peptide (PF04650; HMM-score: 10.1)Glug; The GLUG motif (PF07581; HMM-score: 7.1)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cellwall
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 0
- Cellwall Score: 10
- Extracellular Score: 0
- Internal Helices: 2
- SignalP: Signal peptide SP(Sec/SPI) length 33 aa
- SP(Sec/SPI): 0.98483
- TAT(Tat/SPI): 0.008282
- LIPO(Sec/SPII): 0.001095
- Cleavage Site: CS pos: 33-34. VDA-AT. Pr: 0.9782
- predicted transmembrane helices (TMHMM): 3
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: WP_000473003 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MFKKDRFSIRKIKGVVGSVFLGSLLMAPSVVDAATYHYVNKEIISQEAKDLIQTGKPDRNEVVYGLVYQKDQLPQTGTEASVLTAFGLLTVGSLLLIYKRKKIASVFLVGAMGLVVLPSAGAVDPVATLALASREGVVEMEGYRYVGYLSGDILKTLGLDTVLEETSAKPGEVTVVEVETPQSTTNQEQARTENQVVETEEAPKTEESPKEEPKSEIKPTDDTLPKVEEGKEDSAEPAPVEEVGGEVESKPEEKVAVKPESQPSDKPAEESKVEPPVEQAKGPEQPVQPTQAEQPRIPKDSSQPEDPKEDRGAEDTPKQEDTPKQEDTQPEVVETKDEAANQPVEEPKVETPAVEKQTEPKVEQVGEPVEPSEDEKAPVSPEKQPEAPEEKAVEETPKPEDKIKGIGTKEPVDKSELNNQIDKASSVSPTDYSTASYNALGPVLETAKGVYASEPVKQPEVNSETNKLKTAIDALNVDKSELQEQLRVAEQKQQADYSAKTWREFKIAELQAKEINNQTTPLPKQSEIDAATKALQDALQALAVDKTVLQNAINTANSKREEEYTAQTWKALEDALTAVNPVNEDETATQSKVDEATRNLEEAINNLVLLTEKPVLTFIETDKKALEREVVAKYSLENQNKTKIKSITATLKKGETVVSTVELIGDDVTNETITSAFKNLEYYKEYTLSTTMVYDRGDGDVTEILDNQPIQLDLKKVELKNIKRTDLIKYENGKETNESLITTVPDDKRNYYLKITSKNQKTTLLAVKNIEETTVNGTPVYKVTAIADNLVSRTADNKFEEEYVHYIEKPKVHEDNVYYNFKELVEAIQNDPSKEYRLGQSMSARNVVPNGKSYITKEFTGKLLSSEGKQFAITELEHPLFNVITNATINNVNFENVEIERSGQDNIASLANTMKGSSVITNVKITGTLSGRNNVAGFVNNMNDGTRIENVAFFGKLHSTSGNGSHTGGIAGTNYRGIVRKAYVDATITGNKTRASLLVPKVDYGLTLDHLIGTKALLTESVVKGKIDVSNPVEVGAIASKTWPVGTVSNSVSYAKIIRGEELFGSNDVDDSDYASAHIKDLYAVEGYSSGNRSFRKSKTFTKLTKEQADAKVTTFNITADKLESDLSPLAKLNEEKAYSSIQDYNAEYNQAYKNLEKLIPFYNKDYIVYQGNKLNKEHHLNTKEVLSVTAMNNNEFITNLDEANKIIVHYADGTKDYFNLSSSSEGLSNVKEYTITDLGIKYTPNIVQKDNTTLVNDIKSILESVELQSQTMYQHLNRLGDYRVNAIKDLYLEESFTDVKENLTNLITKLVQNEEHQLNDSPAARQMIRDKVEKNKAALLLGLTYLNRYYGVKFGDVNIKELMLFKPDFYGEKVSVLDRLIEIGSKENNIKGSRTFDAFGQVLAKYTKSGNLDAFLNYNRQLFTNIDNMNDWFIDATEDHVYIAERASEVEEIKNSKHRAFDNLKRSHLRNTILPLLNIDKAHLYLISNYNAIAFGSAERLGKKSLEDIKDIVNKAADGYRNYYDFWYRLASDNVKQRLLRDAVIPIWEGYNAPGGWVEKYGRYNTDKVYTPLREFFGPMDKYYNYNGTGAYAAIYPNSDDIRTDVKYVHLEMVGEYGISVYTHETTHVNDRAIYLGGFGHREGTDAEAYAQGMLQTPVTGSGFDEFGSLGINMVFKRKNDGNQWYITDPKTLKTREDINRYMKGYNDTLTLLDEIEAESVISQQNKDLNSAWFKKIDREYRDNNKLNQWDKIRNLSQEEKNELNIQSVNDLVDQQLMTNRNPGNGIYKPEAISYNDQSPYVGVRMMTGIYGGNTSKGAPGAVSFKHNAFRLWGYYGYENGFLGYASNKYKQQSKTDGESVLSDEYIIKKISNNTFNTIEEFKKAYFKEVKDKATKGLTTFEVNGSSVSSYDDLLTLFKEAVKKDAETLKQEANGNKTVSMNNTVKLKEAVYKKLLQQTDSFKTSIFK
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_0577 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.
⊟Literature[edit | edit source]
⊟References[edit | edit source]
⊟Relevant publications[edit | edit source]
Damiana Chiavolini, Guido Memmi, Tiziana Maggi, Francesco Iannelli, Gianni Pozzi, Marco R Oggioni
The three extra-cellular zinc metalloproteinases of Streptococcus pneumoniae have a different impact on virulence in mice.
BMC Microbiol: 2003, 3;14
[PubMed:12841855] [WorldCat.org] [DOI] (I e)C E Blue, G K Paterson, A R Kerr, M Bergé, J P Claverys, T J Mitchell
ZmpB, a novel virulence factor of Streptococcus pneumoniae that induces tumor necrosis factor alpha production in the respiratory tract.
Infect Immun: 2003, 71(9);4925-35
[PubMed:12933834] [WorldCat.org] [DOI] (P p)