Jump to navigation
Jump to search
PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 15-OCT-2021
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae 670-6B
- locus tag: SP670_RS10740 [old locus tag: SP670_2122 ]
- pan locus tag?: PNEUPAN003615000
- symbol: rnpA
- pan gene symbol?: rnpA
- synonym:
- product: ribonuclease P protein component
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SP670_RS10740 [old locus tag: SP670_2122 ]
- symbol: rnpA
- product: ribonuclease P protein component
- replicon: chromosome
- strand: -
- coordinates: 1984539..1984910
- length: 372
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Location: NC_014498 (1984539..1984910) NCBI
- BioCyc: SP670_RS10740 BioCyc
- MicrobesOnline:
- PneumoBrowse for strain D39V: SPV_1851 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181
241
301
361TTGAAGAAAAACTTTCGTGTAAAAAGAGAGAAAGATTTTAAGGCGATTTTCAAGGAGGGG
ACAAGTTTTGCTAATCGCAAATTTGTGATCTACCAATTAGAAAACCAGAAAAACCATTTT
CGAGTAGGTCTATCAGTTAGCAAAAAACTGGGGAATGCCGTCACTAGAAATCAAATTAAG
CGACGGATTCGGCATATTATCCAGAATGCAAAAGGGAGTCTGGTAGAAGATGTCGACTTT
GTTGTCATTGCTCGAAAAGGAGTCGAAGCCTTGGGATACGCAGAGATGGAGAAAAATCTA
CTCCACGTATTAAAATTATCAAAGATTTACCAGGAAGGAAATGGGAGTGAAAAAGAAACT
AAAGTTGACTAG60
120
180
240
300
360
372
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SP670_RS10740 [old locus tag: SP670_2122 ]
- symbol: RnpA
- description: ribonuclease P protein component
- length: 123
- theoretical pI: 10.8281
- theoretical MW: 14236.4
- GRAVY: -0.615447
⊟Function[edit | edit source]
- reaction: EC 3.1.26.5? ExPASyRibonuclease P Endonucleolytic cleavage of RNA, removing 5'-extranucleotides from tRNA precursor
- TIGRFAM: Transcription RNA processing ribonuclease P protein component (TIGR00188; EC 3.1.26.5; HMM-score: 104)and 1 moreProtein fate Degradation of proteins, peptides, and glycopeptides peptidase T (TIGR01882; EC 3.4.11.-; HMM-score: 13.5)
- TheSEED: see SP670_2122
- PFAM: S5 (CL0329) Ribonuclease_P; Ribonuclease P (PF00825; HMM-score: 109.9)and 1 moreNTF2 (CL0051) DUF4783; Domain of unknown function (DUF4783) (PF16022; HMM-score: 12.8)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 9.97
- Cytoplasmic Membrane Score: 0
- Cellwall Score: 0.01
- Extracellular Score: 0.02
- Internal Helices: 0
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.008807
- TAT(Tat/SPI): 0.001463
- LIPO(Sec/SPII): 0.001608
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: WP_000739241 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MKKNFRVKREKDFKAIFKEGTSFANRKFVIYQLENQKNHFRVGLSVSKKLGNAVTRNQIKRRIRHIIQNAKGSLVEDVDFVVIARKGVEALGYAEMEKNLLHVLKLSKIYQEGNGSEKETKVD
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_1851 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.