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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 15-OCT-2021
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae 670-6B
- locus tag: SP670_RS10770 [old locus tag: SP670_2128 ]
- pan locus tag?: PNEUPAN003609000
- symbol: SP670_RS10770
- pan gene symbol?: comGF
- synonym:
- product: competence protein ComGF
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SP670_RS10770 [old locus tag: SP670_2128 ]
- symbol: SP670_RS10770
- product: competence protein ComGF
- replicon: chromosome
- strand: -
- coordinates: 1988428..1988889
- length: 462
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: NC_014498 (1988428..1988889) NCBI
- BioCyc: SP670_RS10770 BioCyc
- MicrobesOnline:
- PneumoBrowse for strain D39V: SPV_1858 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
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241
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361
421ATGGTTCAGAACAGTTGTTGGCAATCAAAGAGCCATAAGGTCAAGGCTTTTACCTTGTTA
GAATCCCTGCTTGCCCTCATTGTCATCAGTGGGGGATTACTCCTTTTTCAAGCTATGAGT
CAGCTCCTCATTTCAGAAGTTCGCTACCAGCAACAAAGCGAGCAAAAGGAGTGGCTCTTG
TTTGTGGACCAACTTGAGGCAGAATTAGACCGTTCGCAGTTCGAAAAAGTAGAAGGCAAT
CGCCTATACATGAAGCAAGATGGCAAGGACATCGCCATCGGTAAGTCAAAGTCAGACGAT
TTTCGTAAAACCGATGCTAGTGGACGGGGGTATCAGCCTATGGTTTATGGCCTCAAATCA
GCTCAGATTACAGAGGACAATCAACTGGTTCATTTTCGTTTCCAGTTTCAAAAAGGCTTA
GAAAGGGAGTTCATCTATCGTGTGGAAAAAGAAGAAAGTTAA60
120
180
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462
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SP670_RS10770 [old locus tag: SP670_2128 ]
- symbol: SP670_RS10770
- description: competence protein ComGF
- length: 153
- theoretical pI: 6.5418
- theoretical MW: 17821.2
- GRAVY: -0.508497
⊟Function[edit | edit source]
- TIGRFAM: Cell envelope Surface structures type IV pilus modification protein PilV (TIGR02523; HMM-score: 17.2)Protein fate Protein modification and repair type IV pilus modification protein PilV (TIGR02523; HMM-score: 17.2)and 2 moreCell envelope Surface structures prepilin-type N-terminal cleavage/methylation domain (TIGR02532; HMM-score: 13.3)Protein fate Protein and peptide secretion and trafficking prepilin-type N-terminal cleavage/methylation domain (TIGR02532; HMM-score: 13.3)
- TheSEED: see SP670_2128
- PFAM: no clan defined ComGF; Putative Competence protein ComGF (PF15980; HMM-score: 86)and 1 moreN_methyl; Prokaryotic N-terminal methylation motif (PF07963; HMM-score: 13.8)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 1.78
- Cytoplasmic Membrane Score: 8.16
- Cellwall Score: 0.06
- Extracellular Score: 0.01
- Internal Helix: 1
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.077272
- TAT(Tat/SPI): 0.006739
- LIPO(Sec/SPII): 0.008773
- predicted transmembrane helices (TMHMM): 1
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: WP_000250523 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MVQNSCWQSKSHKVKAFTLLESLLALIVISGGLLLFQAMSQLLISEVRYQQQSEQKEWLLFVDQLEAELDRSQFEKVEGNRLYMKQDGKDIAIGKSKSDDFRKTDASGRGYQPMVYGLKSAQITEDNQLVHFRFQFQKGLEREFIYRVEKEES
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_1858 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.