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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 15-DEC-2024

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae 70585
  • locus tag: SP70585_RS05895 [old locus tag: SP70585_1185 ]
  • pan locus tag?: PNEUPAN002252000
  • symbol: SP70585_RS05895
  • pan gene symbol?: abc-f
  • synonym:
  • product: ABC-F family ATP-binding cassette domain-containing protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SP70585_RS05895 [old locus tag: SP70585_1185 ]
  • symbol: SP70585_RS05895
  • product: ABC-F family ATP-binding cassette domain-containing protein
  • replicon: chromosome
  • strand: +
  • coordinates: 1080930..1082831
  • length: 1902
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    1861
    ATGATTATTTTACAAGCTAATAAAATTGAACGTTCTTTTGCAGGAGAGGTTCTTTTCGAT
    AATATCAACCTGCAGGTTGATGAACGAGATCGGATTGCTCTTGTTGGGAAAAATGGTGCA
    GGTAAGTCTACTCTTTTGAAGATTTTAGTTGGAGAAGAGGAGCCAACTAGCGGAGAAATC
    AATAAGAAAAAAGATATTTCTCTGTCTTACCTAGCCCAAGATAGCCGTTTTGAGTCTGAA
    AATACCATCTACGATGAAATGCTTCATGTCTTTGATGACTTACGTCGGACAGATAAACAA
    CTTCGTCAGATGGAGTTGGAGATGGGTGAAAAGTCTGGCGATGAATTGGATAAACTGATG
    TCAGATTACGACCACTTATCTGAGAATTTTCGCCAAGCAGGCGGCTTTACCTATGAAGCT
    GATATTCGAGCGATTTTGAATGGATTCAAGTTTGACGAGTCTATGTGGCAGATGAAAATA
    GCTGAACTTTCAGGTGGTCAAAATACTCGTTTGGCTCTAGCTAAAATGCTCCTTGAAAAG
    CCCAATCTCTTGGTCTTGGACGAGCCAACTAACCACTTGGATATTGAAACCATCTCCTGG
    CTAGAGAATTACTTGGTAAACTATAGCGGAGCCCTCATTATCGTCAGCCACGACCGTTAT
    TTCTTGGACAAGGTTGCGACAATTACGCTAGATTTGACCAAGCATTCCTTGGATCGCTAT
    GTGGGGAATTACTCTCGTTTTGTCGAGTTGAAGGAGCAAAAGCTAGCTACTGAGGCAAAA
    AACTATGAAAAGCAACAGAAGGAAATCGCTGCTCTGGAAGACTTTGTCAATCGCAATCTA
    GTTCGTGCTTCAACGACCAAACGTGCTCAATCTCGCCGTAAACAACTAGAAAAAATGGAG
    CGTTTGGACAAGCCGGAAGCTGGCAAGAAAGCAGCCAACATGACCTTCCAGTCTGAAAAA
    ACGTCGGGCAATGTTGTTTTGACTGTTGAAAATGCGGCTGTTGGCTATGATGGGGAAGTC
    CTGTCACAACCGATTAACCTAGACCTTCGTAAGATGAATGCTGTTGCTATCGTTGGTCCC
    AATGGTATCGGAAAATCAACCTTTATCAAATCAATCGTGGATCAAATTCCGTTTATCAAG
    GGAGAAAAGCGCTTTGGCGCTAATGTTGAGGTTGGTTACTATGACCAAACCCAAAGCAAG
    CTGACACCAAGTAATACGGTGCTGGATGAACTCTGGAATGATTTCAAACTGACACCAGAA
    GTTGAAATCCGCAACCGTCTTGGAGCCTTCCTTTTCTCAGGAGATGATGTTAAAAAATCA
    GTCGGCATGCTATCTGGTGGCGAAAAAGCTCGTTTGCTTTTAGCTAAATTGTCTATGGAA
    AACAATAACTTTTTGATTCTGGATGAGCCGACCAACCACTTGGATATTGATAGTAAGGAA
    GTGCTAGAAAATGCCTTGATTGACTTTGATGGTACCTTGCTGTTTGTCAGTCATGATCGT
    TACTTTATCAATTGTGTGGCAACTCATGTTTTGGAATTGTCTGAGAATGGTTCAACTCTC
    TACCTTGGAGATTACGACTACTATGTTGAGAAGAAAGCAACAGCAGAAATGAGTCAGACT
    GAGGAAGCTTCAACTAGCAATCAAGCAAAGGAAGCAAGTCCAGTCAATGACTATCAGGCC
    CAGAAAGAAAGTCAAAAAGAAGTTCGCAAACTCATGCGACAAATCGAAAGTCTAGAAGCT
    GAAATTGAAGAGCTAGAAAGTCAAAGCCAAGCCATTTCTGAACAAATGTTGGAAACAAAC
    GATGCCGACAAACTCATGGAATTACAGGCTGAGCTGGATAAAATCAGCCATCGTCAGGAA
    GAAGCTATGCTTGAGTGGGAAGAATTATCAGATCAGGTGTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1680
    1740
    1800
    1860
    1902

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SP70585_RS05895 [old locus tag: SP70585_1185 ]
  • symbol: SP70585_RS05895
  • description: ABC-F family ATP-binding cassette domain-containing protein
  • length: 633
  • theoretical pI: 4.52543
  • theoretical MW: 71884.5
  • GRAVY: -0.517694

⊟Function[edit | edit source]

  • TIGRFAM:
    ATP-binding cassette protein, ChvD family (TIGR03719; HMM-score: 414.1)
    and 84 more
    thiol reductant ABC exporter, CydD subunit (TIGR02857; HMM-score: 150.3)
    thiol reductant ABC exporter, CydC subunit (TIGR02868; HMM-score: 144.5)
    Cellular processes Cellular processes Toxin production and resistance putative bacteriocin export ABC transporter, lactococcin 972 group (TIGR03608; HMM-score: 128.9)
    Metabolism Transport and binding proteins Unknown substrate putative bacteriocin export ABC transporter, lactococcin 972 group (TIGR03608; HMM-score: 128.9)
    Metabolism Transport and binding proteins Unknown substrate energy-coupling factor transporter ATPase (TIGR04521; EC 3.6.3.-; HMM-score: 128.9)
    Genetic information processing Protein fate Protein and peptide secretion and trafficking lipoprotein releasing system, ATP-binding protein (TIGR02211; EC 3.6.3.-; HMM-score: 123.7)
    Genetic information processing Protein fate Protein and peptide secretion and trafficking heme ABC exporter, ATP-binding protein CcmA (TIGR01189; EC 3.6.3.41; HMM-score: 121.7)
    Metabolism Transport and binding proteins Other heme ABC exporter, ATP-binding protein CcmA (TIGR01189; EC 3.6.3.41; HMM-score: 121.7)
    Cellular processes Cellular processes Pathogenesis type I secretion system ATPase (TIGR03375; HMM-score: 118.1)
    Genetic information processing Protein fate Protein and peptide secretion and trafficking type I secretion system ATPase (TIGR03375; HMM-score: 118.1)
    Metabolism Transport and binding proteins Amino acids, peptides and amines urea ABC transporter, ATP-binding protein UrtD (TIGR03411; HMM-score: 118.1)
    Metabolism Transport and binding proteins Amino acids, peptides and amines urea ABC transporter, ATP-binding protein UrtE (TIGR03410; HMM-score: 116.5)
    proposed F420-0 ABC transporter, ATP-binding protein (TIGR03873; HMM-score: 116.3)
    lantibiotic protection ABC transporter, ATP-binding subunit (TIGR03740; HMM-score: 113)
    Cellular processes Cellular processes Cell division cell division ATP-binding protein FtsE (TIGR02673; HMM-score: 111.8)
    Metabolism Transport and binding proteins Cations and iron carrying compounds cobalt ABC transporter, ATP-binding protein (TIGR01166; HMM-score: 108)
    Genetic information processing Protein fate Protein and peptide secretion and trafficking ABC-type bacteriocin transporter (TIGR01193; HMM-score: 106.6)
    Genetic information processing Protein fate Protein modification and repair ABC-type bacteriocin transporter (TIGR01193; HMM-score: 106.6)
    Metabolism Transport and binding proteins Other ABC-type bacteriocin transporter (TIGR01193; HMM-score: 106.6)
    Metabolism Transport and binding proteins Anions phosphonate ABC transporter, ATP-binding protein (TIGR02315; EC 3.6.3.28; HMM-score: 106.1)
    Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Other FeS assembly ATPase SufC (TIGR01978; HMM-score: 105.1)
    Metabolism Transport and binding proteins Anions phosphate ABC transporter, ATP-binding protein (TIGR00972; EC 3.6.3.27; HMM-score: 105)
    Cellular processes Cellular processes Biosynthesis of natural products NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein (TIGR03796; HMM-score: 104.3)
    Metabolism Transport and binding proteins Amino acids, peptides and amines NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein (TIGR03796; HMM-score: 104.3)
    Metabolism Transport and binding proteins Carbohydrates, organic alcohols, and acids ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system (TIGR03864; HMM-score: 102.7)
    Genetic information processing Protein fate Protein and peptide secretion and trafficking type I secretion system ATPase (TIGR01842; HMM-score: 102.1)
    Metabolism Transport and binding proteins Unknown substrate energy-coupling factor transporter ATPase (TIGR04520; EC 3.6.3.-; HMM-score: 101.4)
    Cellular processes Cellular processes Biosynthesis of natural products NHLM bacteriocin system ABC transporter, ATP-binding protein (TIGR03797; HMM-score: 99.2)
    Metabolism Transport and binding proteins Amino acids, peptides and amines NHLM bacteriocin system ABC transporter, ATP-binding protein (TIGR03797; HMM-score: 99.2)
    Metabolism Transport and binding proteins Other daunorubicin resistance ABC transporter, ATP-binding protein (TIGR01188; HMM-score: 95.9)
    phosphonate C-P lyase system protein PhnL (TIGR02324; HMM-score: 95.1)
    Metabolism Energy metabolism Methanogenesis methyl coenzyme M reductase system, component A2 (TIGR03269; HMM-score: 94.8)
    Metabolism Transport and binding proteins Cations and iron carrying compounds nickel import ATP-binding protein NikE (TIGR02769; EC 3.6.3.24; HMM-score: 94)
    Metabolism Transport and binding proteins Other thiamine ABC transporter, ATP-binding protein (TIGR01277; EC 3.6.3.-; HMM-score: 93.5)
    Metabolism Transport and binding proteins Anions molybdate ABC transporter, ATP-binding protein (TIGR02142; EC 3.6.3.29; HMM-score: 93.2)
    Metabolism Transport and binding proteins Anions sulfate ABC transporter, ATP-binding protein (TIGR00968; EC 3.6.3.25; HMM-score: 93)
    Metabolism Transport and binding proteins Unknown substrate anchored repeat-type ABC transporter, ATP-binding subunit (TIGR03771; HMM-score: 92.7)
    Metabolism Transport and binding proteins Amino acids, peptides and amines putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein (TIGR03265; HMM-score: 90.9)
    Cellular processes Cellular processes Other nodulation ABC transporter NodI (TIGR01288; HMM-score: 89.4)
    Metabolism Transport and binding proteins Other nodulation ABC transporter NodI (TIGR01288; HMM-score: 89.4)
    Metabolism Transport and binding proteins Carbohydrates, organic alcohols, and acids D-xylose ABC transporter, ATP-binding protein (TIGR02633; EC 3.6.3.17; HMM-score: 88.9)
    ABC transporter, permease/ATP-binding protein (TIGR02204; HMM-score: 87.6)
    Metabolism Transport and binding proteins Carbohydrates, organic alcohols, and acids peroxysomal long chain fatty acyl transporter (TIGR00954; HMM-score: 87.3)
    Genetic information processing Protein fate Protein and peptide secretion and trafficking type I secretion system ATPase (TIGR01846; HMM-score: 86.2)
    ABC exporter ATP-binding subunit, DevA family (TIGR02982; HMM-score: 85.7)
    Cell structure Cell envelope Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides LPS export ABC transporter ATP-binding protein (TIGR04406; HMM-score: 84.2)
    Metabolism Transport and binding proteins Other LPS export ABC transporter ATP-binding protein (TIGR04406; HMM-score: 84.2)
    gliding motility-associated ABC transporter ATP-binding subunit GldA (TIGR03522; HMM-score: 82)
    Cell structure Cell envelope Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides lipid A export permease/ATP-binding protein MsbA (TIGR02203; HMM-score: 81.7)
    Metabolism Transport and binding proteins Other lipid A export permease/ATP-binding protein MsbA (TIGR02203; HMM-score: 81.7)
    Metabolism Transport and binding proteins Other antigen peptide transporter 2 (TIGR00958; HMM-score: 80.2)
    Metabolism Transport and binding proteins Cations and iron carrying compounds nickel import ATP-binding protein NikD (TIGR02770; HMM-score: 79.1)
    Metabolism Transport and binding proteins Anions nitrate ABC transporter, ATP-binding proteins C and D (TIGR01184; HMM-score: 77.5)
    Metabolism Transport and binding proteins Other nitrate ABC transporter, ATP-binding proteins C and D (TIGR01184; HMM-score: 77.5)
    2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT (TIGR03258; HMM-score: 75)
    ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA (TIGR03005; HMM-score: 74.8)
    Metabolism Transport and binding proteins Carbohydrates, organic alcohols, and acids glucan exporter ATP-binding protein (TIGR01192; EC 3.6.3.42; HMM-score: 67.7)
    Metabolism Transport and binding proteins Amino acids, peptides and amines polyamine ABC transporter, ATP-binding protein (TIGR01187; EC 3.6.3.31; HMM-score: 64.2)
    Metabolism Transport and binding proteins Other pigment precursor permease (TIGR00955; HMM-score: 63)
    Metabolism Transport and binding proteins Anions cystic fibrosis transmembrane conductor regulator (CFTR) (TIGR01271; EC 3.6.3.49; HMM-score: 58.8)
    Metabolism Transport and binding proteins Amino acids, peptides and amines cyclic peptide transporter (TIGR01194; HMM-score: 57.5)
    Metabolism Transport and binding proteins Other cyclic peptide transporter (TIGR01194; HMM-score: 57.5)
    Metabolism Transport and binding proteins Amino acids, peptides and amines glycine betaine/L-proline transport ATP binding subunit (TIGR01186; HMM-score: 54.9)
    Metabolism Transport and binding proteins Other multi drug resistance-associated protein (MRP) (TIGR00957; HMM-score: 51.4)
    D-methionine ABC transporter, ATP-binding protein (TIGR02314; EC 3.6.3.-; HMM-score: 49.3)
    Metabolism Central intermediary metabolism Phosphorus compounds phosphonate C-P lyase system protein PhnK (TIGR02323; HMM-score: 48.9)
    Metabolism Transport and binding proteins Amino acids, peptides and amines choline ABC transporter, ATP-binding protein (TIGR03415; HMM-score: 43.5)
    Genetic information processing DNA metabolism DNA replication, recombination, and repair excinuclease ABC subunit A (TIGR00630; EC 3.1.25.-; HMM-score: 32.3)
    Metabolism Transport and binding proteins Other rim ABC transporter (TIGR01257; HMM-score: 29.6)
    Cellular processes Cellular processes Chemotaxis and motility flagellar biosynthesis protein FlhF (TIGR03499; HMM-score: 23.5)
    P-type DNA transfer ATPase VirB11 (TIGR02788; HMM-score: 21.9)
    Unknown function General small GTP-binding protein domain (TIGR00231; HMM-score: 20.8)
    Genetic information processing Protein synthesis Other ribosome-associated GTPase EngA (TIGR03594; HMM-score: 20.4)
    Metabolism Transport and binding proteins Other pleiotropic drug resistance family protein (TIGR00956; HMM-score: 18)
    Genetic information processing Protein synthesis Other ribosome biogenesis GTP-binding protein YsxC (TIGR03598; HMM-score: 17.2)
    Genetic information processing Protein synthesis Other GTP-binding protein Era (TIGR00436; HMM-score: 16.1)
    Genetic information processing Protein fate Protein and peptide secretion and trafficking type VII secretion protein EccCb (TIGR03925; HMM-score: 16)
    Metabolism Transport and binding proteins Amino acids, peptides and amines LAO/AO transport system ATPase (TIGR00750; EC 2.7.-.-; HMM-score: 15.6)
    Signal transduction Regulatory functions Protein interactions LAO/AO transport system ATPase (TIGR00750; EC 2.7.-.-; HMM-score: 15.6)
    Genetic information processing Protein synthesis Other Obg family GTPase CgtA (TIGR02729; HMM-score: 14)
    Genetic information processing Protein fate Protein modification and repair [FeFe] hydrogenase H-cluster maturation GTPase HydF (TIGR03918; HMM-score: 9.5)
    Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Pantothenate and coenzyme A dephospho-CoA kinase (TIGR00152; EC 2.7.1.24; HMM-score: 8.8)
    Cellular processes Cellular processes Cell division chromosome segregation protein SMC (TIGR02168; HMM-score: 4.3)
    Genetic information processing DNA metabolism Chromosome-associated proteins chromosome segregation protein SMC (TIGR02168; HMM-score: 4.3)
  • TheSEED: see SP70585_1185
  • PFAM:
    P-loop_NTPase (CL0023) ABC_tran; ABC transporter (PF00005; HMM-score: 162.5)
    and 55 more
    ABC_tran_Xtn; ABC transporter (PF12848; HMM-score: 95.1)
    AAA_21; AAA domain, putative AbiEii toxin, Type IV TA system (PF13304; HMM-score: 46.6)
    SMC_N; RecF/RecN/SMC N terminal domain (PF02463; HMM-score: 41.6)
    AAA_29; P-loop containing region of AAA domain (PF13555; HMM-score: 36.2)
    no clan defined ABC_tran_CTD; ABC transporter C-terminal domain (PF16326; HMM-score: 35.1)
    P-loop_NTPase (CL0023) AAA_22; AAA domain (PF13401; HMM-score: 33.7)
    RsgA_GTPase; RsgA GTPase (PF03193; HMM-score: 32)
    MMR_HSR1; 50S ribosome-binding GTPase (PF01926; HMM-score: 31.2)
    AAA_23; AAA domain (PF13476; HMM-score: 29)
    RNA_helicase; RNA helicase (PF00910; HMM-score: 28)
    AAA_24; AAA domain (PF13479; HMM-score: 27.9)
    Dynamin_N; Dynamin family (PF00350; HMM-score: 27)
    NACHT; NACHT domain (PF05729; HMM-score: 26.6)
    NB-ARC; NB-ARC domain (PF00931; HMM-score: 25.3)
    AAA_14; AAA domain (PF13173; HMM-score: 22)
    AAA_18; AAA domain (PF13238; HMM-score: 21.5)
    TsaE; Threonylcarbamoyl adenosine biosynthesis protein TsaE (PF02367; HMM-score: 20.5)
    Roc; Ras of Complex, Roc, domain of DAPkinase (PF08477; HMM-score: 19.8)
    VirE; Virulence-associated protein E (PF05272; HMM-score: 19.6)
    AAA_33; AAA domain (PF13671; HMM-score: 19.5)
    TniB; Bacterial TniB protein (PF05621; HMM-score: 19.2)
    AAA_16; AAA ATPase domain (PF13191; HMM-score: 19)
    DUF5906; Family of unknown function (DUF5906) (PF19263; HMM-score: 19)
    DO-GTPase2; Double-GTPase 2 (PF19993; HMM-score: 18.3)
    no clan defined EAD9; Effector-associated domain 9 (PF19962; HMM-score: 17.7)
    P-loop_NTPase (CL0023) FtsK_SpoIIIE; FtsK/SpoIIIE family (PF01580; HMM-score: 17.3)
    AAA_7; P-loop containing dynein motor region (PF12775; HMM-score: 17)
    DUF87; Helicase HerA, central domain (PF01935; HMM-score: 16.8)
    AAA_28; AAA domain (PF13521; HMM-score: 16.1)
    Septin; Septin (PF00735; HMM-score: 16)
    DUF815; Protein of unknown function (DUF815) (PF05673; HMM-score: 15.9)
    Rad17; Rad17 P-loop domain (PF03215; HMM-score: 15.8)
    AAA_30; AAA domain (PF13604; HMM-score: 15.7)
    AAA_25; AAA domain (PF13481; HMM-score: 14.8)
    Pox_A32; Poxvirus A32 protein (PF04665; HMM-score: 14.3)
    AAA; ATPase family associated with various cellular activities (AAA) (PF00004; HMM-score: 14.1)
    NTPase_1; NTPase (PF03266; HMM-score: 13.1)
    MipZ; ATPase MipZ (PF09140; HMM-score: 12.9)
    cobW; CobW/HypB/UreG, nucleotide-binding domain (PF02492; HMM-score: 12.5)
    MeaB; Methylmalonyl Co-A mutase-associated GTPase MeaB (PF03308; HMM-score: 12)
    FeoB_N; Ferrous iron transport protein B (PF02421; HMM-score: 11.9)
    TIM_barrel (CL0036) CutC; CutC family (PF03932; HMM-score: 11.9)
    P-loop_NTPase (CL0023) ATPase_2; ATPase domain predominantly from Archaea (PF01637; HMM-score: 11.5)
    SpoIVA_ATPase; Stage IV sporulation protein A, ATPase domain (PF09547; HMM-score: 11.3)
    AAA_15; AAA ATPase domain (PF13175; HMM-score: 10.8)
    AAA_27; AAA domain (PF13514; HMM-score: 10.5)
    AT14A-like (CL0133) BPS1; Protein BPS1 (PF03087; HMM-score: 10.1)
    P-loop_NTPase (CL0023) AAA_10; AAA-like domain (PF12846; HMM-score: 9.2)
    no clan defined HAUS6_N; HAUS augmin-like complex subunit 6 N-terminus (PF14661; HMM-score: 9.2)
    DUF2730; Protein of unknown function (DUF2730) (PF10805; HMM-score: 7.6)
    DUF2203; Uncharacterized conserved protein (DUF2203) (PF09969; HMM-score: 7.3)
    P-loop_NTPase (CL0023) AAA_11; AAA domain (PF13086; HMM-score: 6.9)
    no clan defined DUF4407; Domain of unknown function (DUF4407) (PF14362; HMM-score: 6.9)
    XkdW; XkdW protein (PF09636; HMM-score: 6.8)
    tRNA_synt_II (CL0040) tRNA-synt_His; Histidyl-tRNA synthetase (PF13393; HMM-score: 6.7)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 9.95
    • Cytoplasmic Membrane Score: 0.05
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9699
    • Cytoplasmic Membrane Score: 0.0197
    • Cell wall & surface Score: 0.0006
    • Extracellular Score: 0.0098
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.007873
    • TAT(Tat/SPI): 0.005572
    • LIPO(Sec/SPII): 0.000451
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MIILQANKIERSFAGEVLFDNINLQVDERDRIALVGKNGAGKSTLLKILVGEEEPTSGEINKKKDISLSYLAQDSRFESENTIYDEMLHVFDDLRRTDKQLRQMELEMGEKSGDELDKLMSDYDHLSENFRQAGGFTYEADIRAILNGFKFDESMWQMKIAELSGGQNTRLALAKMLLEKPNLLVLDEPTNHLDIETISWLENYLVNYSGALIIVSHDRYFLDKVATITLDLTKHSLDRYVGNYSRFVELKEQKLATEAKNYEKQQKEIAALEDFVNRNLVRASTTKRAQSRRKQLEKMERLDKPEAGKKAANMTFQSEKTSGNVVLTVENAAVGYDGEVLSQPINLDLRKMNAVAIVGPNGIGKSTFIKSIVDQIPFIKGEKRFGANVEVGYYDQTQSKLTPSNTVLDELWNDFKLTPEVEIRNRLGAFLFSGDDVKKSVGMLSGGEKARLLLAKLSMENNNFLILDEPTNHLDIDSKEVLENALIDFDGTLLFVSHDRYFINCVATHVLELSENGSTLYLGDYDYYVEKKATAEMSQTEEASTSNQAKEASPVNDYQAQKESQKEVRKLMRQIESLEAEIEELESQSQAISEQMLETNDADKLMELQAELDKISHRQEEAMLEWEELSDQV

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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