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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 10-APR-2025

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae SPN034156
  • locus tag: SPN034156_RS00540 [old locus tag: SPN034156_01080 ]
  • pan locus tag?: PNEUPAN002252000
  • symbol: SPN034156_RS00540
  • pan gene symbol?: abc-f
  • synonym:
  • product: ABC-F family ATP-binding cassette domain-containing protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPN034156_RS00540 [old locus tag: SPN034156_01080 ]
  • symbol: SPN034156_RS00540
  • product: ABC-F family ATP-binding cassette domain-containing protein
  • replicon: chromosome
  • strand: +
  • coordinates: 101251..103152
  • length: 1902
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: NC_021006 (101251..103152) NCBI
  • BioCyc:
  • MicrobesOnline:
  • PneumoBrowse for strain D39V: SPV_0998 PneumoBrowse

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    1861
    ATGATTATTTTACAAGCTAATAAAATTGAACGTTCTTTTGCAGGAGAGGTTCTTTTCGAT
    AATATCAACCTGCAGGTTGATGAACGAGATCGGATTGCTCTTGTTGGGAAAAATGGTGCA
    GGTAAGTCTACTCTTTTGAAGATTTTAGTTGGAGAAGAGGAGCCAACTAGCGGAGAAATC
    AATAAGAAAAAAGATATTTCTCTGTCTTACCTAGCCCAAGATAGCCGTTTTGAGTCTGAA
    AATACCATCTACGATGAAATGCTTCATGTCTTTAATGATTTGCGTCGGACGGAGAGACAA
    CTGCGTCAGATGGAGCTGGAGATGGGTGAAAAGTCTGGTGAGGATTTGGATAAACTGATG
    TCAGATTATGACCGCTTATCTGAGAATTTTCGCCAAGCAGGTGGCTTTACCTATGAAGCT
    GATATTCGAGCGATTTTGAATGGATTCAAGTTTGACGAGTCTATGTGGCAGATGAAAATT
    GCTGAGCTTTCTGGTGGTCAAAATACTCGTTTGGCACTTGCCAAAATGCTCCTTGAAAAG
    CCCAATCTCTTGGTCTTGGACGAGCCAACTAACCACTTGGATATTGAAACCATCGCCTGG
    CTAGAGAATTACTTGGTAAACTATAGCGGTGCCCTCATTATCGTCAGCCACGACCGTTAT
    TTCTTGGACAAGGTTGCGACAATTACGCTAGATTTGACCAAGCATTCCTTGGATCGCTAT
    GTGGGGAATTACTCTCGTTTTGTCGAATTGAAGGAGCAAAAGCTAGCTACTGAGGCAAAA
    AACTATGAAAAGCAACAGAAGGAAATCGCTGCTCTGGAAGACTTTGTCAATCGCAATCTA
    GTTCGTGCTTCAACGACTAAACGTGCTCAATCTCGCCGTAAACAACTAGAAAAAATGGAG
    CGTTTGGACAAGCCTGAAGCTGGCAAGAAAGCAGCCAACATGACCTTCCAGTCTGAAAAA
    ACGTCGGGCAATGTTGTTTTGACTGTTGAAAATACTGCTATTGGTTATGACGGGGAAGTC
    TTGTCACAACCTATCAACCTAGATCTTCGTAAGATGAATGCTGTCGCTATCGTTGGTCCA
    AATGGTATCGGCAAGTCAACCTTTATCAAGTCTATTGTGGACCAGATTCCTTTTATCAAA
    GGTGAAAAGCGCTTTGGCGCTAATGTTGAGGTTGGTTACTATGACCAAACCCAAAGCAAG
    CTGACACCAAGTAATACGGTGCTGGATGAACTCTGGAATGATTTCAAACTGACACCAGAA
    GTTGAAATCCGCAACCGTCTTGGAGCCTTCCTTTTCTCAGGAGATGATGTTAAAAAATCA
    GTCGGCATGCTATCTGGTGGCGAAAAAGCTCGTTTGCTTTTAGCTAAATTGTCTATGGAA
    AACAACAACTTCCTGATCCTTGACGAGCCGACCAACCACTTGGATATTGATAGCAAGGAA
    GTGTTGGAAAATGCTTTGATTGACTTTGATGGTACCTTGCTTTTTGTCAGTCATGATCGT
    TACTTTATCAATCGTGTGGCAACTCATGTTTTGGAATTGTCTGAGAATGGTTCAACTCTC
    TACCTTGGAGATTACGACTACTATGTTGAGAAGAAAGCAACAGCAGAAATGAGTCAGACT
    GAGGAAGCTTCAACTAGCAATCAAGCAAAGGAAGCAAGTCCAGTCAATGACTATCAGGCC
    CAGAAAGAAAGTCAAAAAGAAGTTCGCAAACTCATGCGACAAATCGAAAGTCTAGAAGCT
    AAAATTGAAGAGCTAGAAAGTCAAAGCCAAGCCATTTCTGAACAAATGTTGGAAACAAAC
    GATGCCGACAAACTCATGGAATTACAGGCTGAGCTGGACAAAATCAGCCATCGTCAGGAA
    GAAGCTATGCTTGAGTGGGAAGAATTATCAGATCAGGTGTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1680
    1740
    1800
    1860
    1902

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPN034156_RS00540 [old locus tag: SPN034156_01080 ]
  • symbol: SPN034156_RS00540
  • description: ABC-F family ATP-binding cassette domain-containing protein
  • length: 633
  • theoretical pI: 4.60745
  • theoretical MW: 72024.8
  • GRAVY: -0.531754

⊟Function[edit | edit source]

  • TIGRFAM:
    ATP-binding cassette protein, ChvD family (TIGR03719; HMM-score: 419.1)
    and 84 more
    thiol reductant ABC exporter, CydD subunit (TIGR02857; HMM-score: 151.6)
    thiol reductant ABC exporter, CydC subunit (TIGR02868; HMM-score: 142.1)
    Metabolism Transport and binding proteins Unknown substrate energy-coupling factor transporter ATPase (TIGR04521; EC 3.6.3.-; HMM-score: 130.5)
    Cellular processes Cellular processes Toxin production and resistance putative bacteriocin export ABC transporter, lactococcin 972 group (TIGR03608; HMM-score: 129.8)
    Metabolism Transport and binding proteins Unknown substrate putative bacteriocin export ABC transporter, lactococcin 972 group (TIGR03608; HMM-score: 129.8)
    Genetic information processing Protein fate Protein and peptide secretion and trafficking lipoprotein releasing system, ATP-binding protein (TIGR02211; EC 3.6.3.-; HMM-score: 123.7)
    Genetic information processing Protein fate Protein and peptide secretion and trafficking heme ABC exporter, ATP-binding protein CcmA (TIGR01189; EC 3.6.3.41; HMM-score: 122.3)
    Metabolism Transport and binding proteins Other heme ABC exporter, ATP-binding protein CcmA (TIGR01189; EC 3.6.3.41; HMM-score: 122.3)
    Metabolism Transport and binding proteins Amino acids, peptides and amines urea ABC transporter, ATP-binding protein UrtD (TIGR03411; HMM-score: 118.6)
    proposed F420-0 ABC transporter, ATP-binding protein (TIGR03873; HMM-score: 117)
    Metabolism Transport and binding proteins Amino acids, peptides and amines urea ABC transporter, ATP-binding protein UrtE (TIGR03410; HMM-score: 116.9)
    Cellular processes Cellular processes Pathogenesis type I secretion system ATPase (TIGR03375; HMM-score: 116)
    Genetic information processing Protein fate Protein and peptide secretion and trafficking type I secretion system ATPase (TIGR03375; HMM-score: 116)
    Cellular processes Cellular processes Cell division cell division ATP-binding protein FtsE (TIGR02673; HMM-score: 114.2)
    lantibiotic protection ABC transporter, ATP-binding subunit (TIGR03740; HMM-score: 112.7)
    Metabolism Transport and binding proteins Anions phosphate ABC transporter, ATP-binding protein (TIGR00972; EC 3.6.3.27; HMM-score: 108.3)
    Genetic information processing Protein fate Protein and peptide secretion and trafficking ABC-type bacteriocin transporter (TIGR01193; HMM-score: 108)
    Genetic information processing Protein fate Protein modification and repair ABC-type bacteriocin transporter (TIGR01193; HMM-score: 108)
    Metabolism Transport and binding proteins Other ABC-type bacteriocin transporter (TIGR01193; HMM-score: 108)
    Metabolism Transport and binding proteins Cations and iron carrying compounds cobalt ABC transporter, ATP-binding protein (TIGR01166; HMM-score: 107.6)
    Metabolism Transport and binding proteins Anions phosphonate ABC transporter, ATP-binding protein (TIGR02315; EC 3.6.3.28; HMM-score: 106.3)
    Cellular processes Cellular processes Biosynthesis of natural products NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein (TIGR03796; HMM-score: 105)
    Metabolism Transport and binding proteins Amino acids, peptides and amines NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein (TIGR03796; HMM-score: 105)
    Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Other FeS assembly ATPase SufC (TIGR01978; HMM-score: 104.4)
    Metabolism Transport and binding proteins Carbohydrates, organic alcohols, and acids ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system (TIGR03864; HMM-score: 103.1)
    Genetic information processing Protein fate Protein and peptide secretion and trafficking type I secretion system ATPase (TIGR01842; HMM-score: 101.1)
    Cellular processes Cellular processes Biosynthesis of natural products NHLM bacteriocin system ABC transporter, ATP-binding protein (TIGR03797; HMM-score: 101.1)
    Metabolism Transport and binding proteins Amino acids, peptides and amines NHLM bacteriocin system ABC transporter, ATP-binding protein (TIGR03797; HMM-score: 101.1)
    Metabolism Transport and binding proteins Unknown substrate energy-coupling factor transporter ATPase (TIGR04520; EC 3.6.3.-; HMM-score: 100.7)
    Metabolism Transport and binding proteins Other daunorubicin resistance ABC transporter, ATP-binding protein (TIGR01188; HMM-score: 97)
    Metabolism Transport and binding proteins Cations and iron carrying compounds nickel import ATP-binding protein NikE (TIGR02769; EC 3.6.3.24; HMM-score: 96.2)
    Metabolism Transport and binding proteins Anions molybdate ABC transporter, ATP-binding protein (TIGR02142; EC 3.6.3.29; HMM-score: 95.9)
    Metabolism Transport and binding proteins Other thiamine ABC transporter, ATP-binding protein (TIGR01277; EC 3.6.3.-; HMM-score: 95.8)
    phosphonate C-P lyase system protein PhnL (TIGR02324; HMM-score: 95.4)
    Metabolism Energy metabolism Methanogenesis methyl coenzyme M reductase system, component A2 (TIGR03269; HMM-score: 95.4)
    Metabolism Transport and binding proteins Anions sulfate ABC transporter, ATP-binding protein (TIGR00968; EC 3.6.3.25; HMM-score: 93.5)
    Metabolism Transport and binding proteins Unknown substrate anchored repeat-type ABC transporter, ATP-binding subunit (TIGR03771; HMM-score: 92.9)
    Metabolism Transport and binding proteins Amino acids, peptides and amines putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein (TIGR03265; HMM-score: 90.9)
    Cellular processes Cellular processes Other nodulation ABC transporter NodI (TIGR01288; HMM-score: 90)
    Metabolism Transport and binding proteins Other nodulation ABC transporter NodI (TIGR01288; HMM-score: 90)
    Metabolism Transport and binding proteins Carbohydrates, organic alcohols, and acids D-xylose ABC transporter, ATP-binding protein (TIGR02633; EC 3.6.3.17; HMM-score: 89)
    Genetic information processing Protein fate Protein and peptide secretion and trafficking type I secretion system ATPase (TIGR01846; HMM-score: 88.4)
    Metabolism Transport and binding proteins Carbohydrates, organic alcohols, and acids peroxysomal long chain fatty acyl transporter (TIGR00954; HMM-score: 87.7)
    ABC transporter, permease/ATP-binding protein (TIGR02204; HMM-score: 87.7)
    ABC exporter ATP-binding subunit, DevA family (TIGR02982; HMM-score: 85.9)
    Cell structure Cell envelope Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides LPS export ABC transporter ATP-binding protein (TIGR04406; HMM-score: 83.6)
    Metabolism Transport and binding proteins Other LPS export ABC transporter ATP-binding protein (TIGR04406; HMM-score: 83.6)
    Cell structure Cell envelope Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides lipid A export permease/ATP-binding protein MsbA (TIGR02203; HMM-score: 82.9)
    Metabolism Transport and binding proteins Other lipid A export permease/ATP-binding protein MsbA (TIGR02203; HMM-score: 82.9)
    Metabolism Transport and binding proteins Other antigen peptide transporter 2 (TIGR00958; HMM-score: 82.8)
    Metabolism Transport and binding proteins Cations and iron carrying compounds nickel import ATP-binding protein NikD (TIGR02770; HMM-score: 82.1)
    gliding motility-associated ABC transporter ATP-binding subunit GldA (TIGR03522; HMM-score: 81)
    Metabolism Transport and binding proteins Anions nitrate ABC transporter, ATP-binding proteins C and D (TIGR01184; HMM-score: 76.6)
    Metabolism Transport and binding proteins Other nitrate ABC transporter, ATP-binding proteins C and D (TIGR01184; HMM-score: 76.6)
    ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA (TIGR03005; HMM-score: 75.7)
    2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT (TIGR03258; HMM-score: 73.5)
    Metabolism Transport and binding proteins Carbohydrates, organic alcohols, and acids glucan exporter ATP-binding protein (TIGR01192; EC 3.6.3.42; HMM-score: 70.8)
    Metabolism Transport and binding proteins Amino acids, peptides and amines polyamine ABC transporter, ATP-binding protein (TIGR01187; EC 3.6.3.31; HMM-score: 63.9)
    Metabolism Transport and binding proteins Other pigment precursor permease (TIGR00955; HMM-score: 62.1)
    Metabolism Transport and binding proteins Anions cystic fibrosis transmembrane conductor regulator (CFTR) (TIGR01271; EC 3.6.3.49; HMM-score: 59)
    Metabolism Transport and binding proteins Amino acids, peptides and amines glycine betaine/L-proline transport ATP binding subunit (TIGR01186; HMM-score: 56.9)
    Metabolism Transport and binding proteins Amino acids, peptides and amines cyclic peptide transporter (TIGR01194; HMM-score: 56.9)
    Metabolism Transport and binding proteins Other cyclic peptide transporter (TIGR01194; HMM-score: 56.9)
    Metabolism Transport and binding proteins Other multi drug resistance-associated protein (MRP) (TIGR00957; HMM-score: 51.9)
    D-methionine ABC transporter, ATP-binding protein (TIGR02314; EC 3.6.3.-; HMM-score: 51)
    Metabolism Central intermediary metabolism Phosphorus compounds phosphonate C-P lyase system protein PhnK (TIGR02323; HMM-score: 50.1)
    Metabolism Transport and binding proteins Amino acids, peptides and amines choline ABC transporter, ATP-binding protein (TIGR03415; HMM-score: 44.5)
    Genetic information processing DNA metabolism DNA replication, recombination, and repair excinuclease ABC subunit A (TIGR00630; EC 3.1.25.-; HMM-score: 32.2)
    Metabolism Transport and binding proteins Other rim ABC transporter (TIGR01257; HMM-score: 28.4)
    Cellular processes Cellular processes Chemotaxis and motility flagellar biosynthesis protein FlhF (TIGR03499; HMM-score: 24)
    P-type DNA transfer ATPase VirB11 (TIGR02788; HMM-score: 21.7)
    Unknown function General small GTP-binding protein domain (TIGR00231; HMM-score: 20.9)
    Genetic information processing Protein synthesis Other ribosome-associated GTPase EngA (TIGR03594; HMM-score: 20.4)
    Metabolism Transport and binding proteins Other pleiotropic drug resistance family protein (TIGR00956; HMM-score: 19)
    Genetic information processing Protein synthesis Other ribosome biogenesis GTP-binding protein YsxC (TIGR03598; HMM-score: 17)
    Genetic information processing Protein fate Protein and peptide secretion and trafficking type VII secretion protein EccCb (TIGR03925; HMM-score: 16.4)
    Genetic information processing Protein synthesis Other GTP-binding protein Era (TIGR00436; HMM-score: 16)
    Metabolism Transport and binding proteins Amino acids, peptides and amines LAO/AO transport system ATPase (TIGR00750; EC 2.7.-.-; HMM-score: 15.9)
    Signal transduction Regulatory functions Protein interactions LAO/AO transport system ATPase (TIGR00750; EC 2.7.-.-; HMM-score: 15.9)
    Genetic information processing Protein synthesis Other Obg family GTPase CgtA (TIGR02729; HMM-score: 14.3)
    Genetic information processing Protein fate Protein modification and repair [FeFe] hydrogenase H-cluster maturation GTPase HydF (TIGR03918; HMM-score: 9.9)
    Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Pantothenate and coenzyme A dephospho-CoA kinase (TIGR00152; EC 2.7.1.24; HMM-score: 8.9)
    Cellular processes Cellular processes Cell division chromosome segregation protein SMC (TIGR02168; HMM-score: 5.5)
    Genetic information processing DNA metabolism Chromosome-associated proteins chromosome segregation protein SMC (TIGR02168; HMM-score: 5.5)
  • TheSEED: see SPN034156_01080
  • PFAM:
    P-loop_NTPase (CL0023) ABC_tran; ABC transporter (PF00005; HMM-score: 163.3)
    and 50 more
    ABC_tran_Xtn; ABC transporter (PF12848; HMM-score: 95.5)
    AAA_21; AAA domain, putative AbiEii toxin, Type IV TA system (PF13304; HMM-score: 48.3)
    SMC_N; RecF/RecN/SMC N terminal domain (PF02463; HMM-score: 41.5)
    AAA_29; P-loop containing region of AAA domain (PF13555; HMM-score: 36.2)
    no clan defined ABC_tran_CTD; ABC transporter C-terminal domain (PF16326; HMM-score: 35.7)
    P-loop_NTPase (CL0023) AAA_22; AAA domain (PF13401; HMM-score: 33.7)
    RsgA_GTPase; RsgA GTPase (PF03193; HMM-score: 32)
    MMR_HSR1; 50S ribosome-binding GTPase (PF01926; HMM-score: 31.8)
    AAA_24; AAA domain (PF13479; HMM-score: 28.4)
    AAA_23; AAA domain (PF13476; HMM-score: 27.9)
    NACHT; NACHT domain (PF05729; HMM-score: 26.3)
    Dynamin_N; Dynamin family (PF00350; HMM-score: 25.8)
    NB-ARC; NB-ARC domain (PF00931; HMM-score: 25.7)
    RNA_helicase; RNA helicase (PF00910; HMM-score: 25.2)
    AAA_14; AAA domain (PF13173; HMM-score: 22)
    AAA_18; AAA domain (PF13238; HMM-score: 20.8)
    TsaE; Threonylcarbamoyl adenosine biosynthesis protein TsaE (PF02367; HMM-score: 20.5)
    AAA; ATPase family associated with various cellular activities (AAA) (PF00004; HMM-score: 20.1)
    TniB; Bacterial TniB protein (PF05621; HMM-score: 20)
    AAA_33; AAA domain (PF13671; HMM-score: 19.9)
    VirE; Virulence-associated protein E (PF05272; HMM-score: 19.5)
    Roc; Ras of Complex, Roc, domain of DAPkinase (PF08477; HMM-score: 19.5)
    AAA_16; AAA ATPase domain (PF13191; HMM-score: 19)
    DUF5906; Family of unknown function (DUF5906) (PF19263; HMM-score: 18)
    DUF87; Helicase HerA, central domain (PF01935; HMM-score: 17.9)
    DO-GTPase2; Double-GTPase 2 (PF19993; HMM-score: 17.7)
    FtsK_SpoIIIE; FtsK/SpoIIIE family (PF01580; HMM-score: 17.4)
    no clan defined EAD9; Effector-associated domain 9 (PF19962; HMM-score: 17.2)
    P-loop_NTPase (CL0023) AAA_7; P-loop containing dynein motor region (PF12775; HMM-score: 17.1)
    AAA_28; AAA domain (PF13521; HMM-score: 16.4)
    Rad17; Rad17 P-loop domain (PF03215; HMM-score: 16)
    Septin; Septin (PF00735; HMM-score: 15.7)
    AAA_30; AAA domain (PF13604; HMM-score: 15.7)
    NTPase_1; NTPase (PF03266; HMM-score: 15.5)
    AAA_25; AAA domain (PF13481; HMM-score: 14.4)
    Pox_A32; Poxvirus A32 protein (PF04665; HMM-score: 13.7)
    cobW; CobW/HypB/UreG, nucleotide-binding domain (PF02492; HMM-score: 12.6)
    MipZ; ATPase MipZ (PF09140; HMM-score: 12.5)
    MeaB; Methylmalonyl Co-A mutase-associated GTPase MeaB (PF03308; HMM-score: 12.3)
    FeoB_N; Ferrous iron transport protein B (PF02421; HMM-score: 12)
    TIM_barrel (CL0036) CutC; CutC family (PF03932; HMM-score: 11.9)
    P-loop_NTPase (CL0023) SpoIVA_ATPase; Stage IV sporulation protein A, ATPase domain (PF09547; HMM-score: 11)
    AAA_15; AAA ATPase domain (PF13175; HMM-score: 10.8)
    AAA_27; AAA domain (PF13514; HMM-score: 10.3)
    HTH (CL0123) SLIDE; SLIDE (PF09111; HMM-score: 9.6)
    P-loop_NTPase (CL0023) AAA_10; AAA-like domain (PF12846; HMM-score: 9.2)
    no clan defined UPF0154; Uncharacterised protein family (UPF0154) (PF03672; HMM-score: 8.8)
    UBC (CL0208) Knl1_RWD_C; Knl1 RWD C-terminal domain (PF18210; HMM-score: 7.2)
    P-loop_NTPase (CL0023) AAA_11; AAA domain (PF13086; HMM-score: 6.2)
    tRNA_synt_II (CL0040) tRNA-synt_His; Histidyl-tRNA synthetase (PF13393; HMM-score: 5.6)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 9.95
    • Cytoplasmic Membrane Score: 0.05
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9679
    • Cytoplasmic Membrane Score: 0.019
    • Cell wall & surface Score: 0.0006
    • Extracellular Score: 0.0124
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.007873
    • TAT(Tat/SPI): 0.005572
    • LIPO(Sec/SPII): 0.000451
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: WP_000584876 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MIILQANKIERSFAGEVLFDNINLQVDERDRIALVGKNGAGKSTLLKILVGEEEPTSGEINKKKDISLSYLAQDSRFESENTIYDEMLHVFNDLRRTERQLRQMELEMGEKSGEDLDKLMSDYDRLSENFRQAGGFTYEADIRAILNGFKFDESMWQMKIAELSGGQNTRLALAKMLLEKPNLLVLDEPTNHLDIETIAWLENYLVNYSGALIIVSHDRYFLDKVATITLDLTKHSLDRYVGNYSRFVELKEQKLATEAKNYEKQQKEIAALEDFVNRNLVRASTTKRAQSRRKQLEKMERLDKPEAGKKAANMTFQSEKTSGNVVLTVENTAIGYDGEVLSQPINLDLRKMNAVAIVGPNGIGKSTFIKSIVDQIPFIKGEKRFGANVEVGYYDQTQSKLTPSNTVLDELWNDFKLTPEVEIRNRLGAFLFSGDDVKKSVGMLSGGEKARLLLAKLSMENNNFLILDEPTNHLDIDSKEVLENALIDFDGTLLFVSHDRYFINRVATHVLELSENGSTLYLGDYDYYVEKKATAEMSQTEEASTSNQAKEASPVNDYQAQKESQKEVRKLMRQIESLEAKIEELESQSQAISEQMLETNDADKLMELQAELDKISHRQEEAMLEWEELSDQV

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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