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serotype 1

NCBI: 17-JAN-2018

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae AP200
  • locus tag: SPAP_1067 [new locus tag: SPAP_RS05280 ]
  • pan locus tag?: PNEUPAN002275000
  • symbol: SPAP_1067
  • pan gene symbol?: glxK
  • synonym:
  • product: Glycerate kinase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPAP_1067 [new locus tag: SPAP_RS05280 ]
  • symbol: SPAP_1067
  • product: Glycerate kinase
  • replicon: chromosome
  • strand: -
  • coordinates: 1017119..1018234
  • length: 1116
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    ATGAAGATTGTAATTGCACCGGATTCGTTTAAGGAAAGCTTGACAGCTCAACAGGTAGCT
    GAAGCAATAAAAAGAGGCTTCCAACAATCGATAGCAGATGTAGAATGTCTCCTCTGCCCT
    GTTGGTGATGGGGGAGAAGGTACTGTAGATGCTATCCGACATTCTCTTGACCTAAAAGAA
    AAATGGATCCAAGTGACAGACCCTTTTGGACAAAAAGAAGCCATGCGCTATTTTCAAAAA
    GGGGAACTGGCACTATTTGAAGTAGCTGACTTGGTTGGTCTTGGAAAAATTCCGCTAGAG
    AAACGAAATCCACTTCAAATCCAAACTTGTGGTATTGGAGAGTTGATTCTCCATCTCATT
    TCTAAAGGGATTAAAGATATTTATATCGGTGTTGGTGGCACGGCCAGTAATGATGGAGGA
    CTGGGGATTGCTGCTGGTTTAGGTTATCAATTTTATGATAGGGATGGAAATGTCTTGCCT
    GCTTCCGGTCAATCCTTATTAAACTTAGCTTCTGTTTCAACAGAAAATCGCTATAAAATT
    CCTGAAGGTGTTCAAATTCATATTTTAGCAGATGTCGTGAGTCCCTTATGTGGTTATCAA
    GGTGCGACTTACACTTTTGGCAATCAAAAAGGTCTACATCCGACTATGTTTGCAGTCGTA
    GATCAGGCGATCCAAGATTTTTATGAAAAATTCTCACCTGCAACATTAGAAATTAAAGGA
    GCAGGAGCAGGTGGAGGCCTTGCTGGTGGTTTGTGTGCCTTTGCTCAGGCAAGTATCGTG
    TCTGGAATTGATACCTGCTTGGACTTAATCAACTTTGATAAGAAAGTTTCAGATGCTGAC
    TTGGTTGTTGTTGGAGAAGGAAGACTTGACAGTCAAAGCTTTGCTGGGAAAGCGCCTATA
    GGTGTTGCAAAAAGAACCCCTGTTGGAGTTCCTGTTATTGCTATTTGCGGTAGTCTTGCT
    GAAGATTTACCTCCCCTACCATTTGAAAATATCCAAGCTGTCTTTTCTATTTTGGAGAAA
    AGTGAACCTTTAGAAGATAGTTTGAAAAATGCCAGTCTCTATCTGGAGCGCACGGCTGCC
    AATATTGGGCACTTATTAAATATGTGCAAGATTTAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1116

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPAP_1067 [new locus tag: SPAP_RS05280 ]
  • symbol: SPAP_1067
  • description: Glycerate kinase
  • length: 371
  • theoretical pI: 4.71576
  • theoretical MW: 39337.9
  • GRAVY: 0.128571

⊟Function[edit | edit source]

  • TIGRFAM:
    Metabolism Energy metabolism Other glycerate kinase (TIGR00045; EC 2.7.1.31; HMM-score: 468.6)
  • TheSEED  :
    • Glycerate kinase (EC 2.7.1.31)
    Amino Acids and Derivatives Alanine, serine, and glycine Glycine and Serine Utilization  Glycerate kinase (EC 2.7.1.31)
    and 3 more
    Carbohydrates One-carbon Metabolism Serine-glyoxylate cycle  Glycerate kinase (EC 2.7.1.31)
    Carbohydrates Organic acids Glycerate metabolism  Glycerate kinase (EC 2.7.1.31)
    Fatty Acids, Lipids, and Isoprenoids Phospholipids Glycerolipid and Glycerophospholipid Metabolism in Bacteria  Glycerate kinase (EC 2.7.1.31)
  • PFAM:
    no clan defined Gly_kinase; Glycerate kinase family (PF02595; HMM-score: 384.5)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.010317
    • TAT(Tat/SPI): 0.001245
    • LIPO(Sec/SPII): 0.001237
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: ADM84656 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MKIVIAPDSFKESLTAQQVAEAIKRGFQQSIADVECLLCPVGDGGEGTVDAIRHSLDLKEKWIQVTDPFGQKEAMRYFQKGELALFEVADLVGLGKIPLEKRNPLQIQTCGIGELILHLISKGIKDIYIGVGGTASNDGGLGIAAGLGYQFYDRDGNVLPASGQSLLNLASVSTENRYKIPEGVQIHILADVVSPLCGYQGATYTFGNQKGLHPTMFAVVDQAIQDFYEKFSPATLEIKGAGAGGGLAGGLCAFAQASIVSGIDTCLDLINFDKKVSDADLVVVGEGRLDSQSFAGKAPIGVAKRTPVGVPVIAICGSLAEDLPPLPFENIQAVFSILEKSEPLEDSLKNASLYLERTAANIGHLLNMCKI

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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