From PneumoWiki
Jump to navigation Jump to search
PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 25-OCT-2019

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae ATCC 49619
  • locus tag: SPAT_0122 [new locus tag: EL263_RS00645 ]
  • pan locus tag?: PNEUPAN000734000
  • symbol: SPAT_0122
  • pan gene symbol?: pavB
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPAT_0122 [new locus tag: EL263_RS00645 ]
  • symbol: SPAT_0122
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 115615..119100
  • length: 3486
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    1861
    1921
    1981
    2041
    2101
    2161
    2221
    2281
    2341
    2401
    2461
    2521
    2581
    2641
    2701
    2761
    2821
    2881
    2941
    3001
    3061
    3121
    3181
    3241
    3301
    3361
    3421
    3481
    ATGAAATTCAATCCAAATCAAAGATATACTCGTTGGTCTATTCGCCGTCTCAGTGTCGGT
    GTTGCCTCAGTTGTTGTGGCTAGTGGCTTCTTTGTCCTAGTTGGTCAGCCAAGTTCTGTA
    CGTGCCGATGTGGTCAATCCGACCCCAGGTCAAGTCTTACCTGAAGAGACATCGGGAACG
    AAAGAGGGTGACTTATCAGAAAAACCAGGAGACACCGTTCTCACTCAAGCGAAACCTGAG
    GGCGTTACTGGAAATACGAATTCACTTCCGACACCTACAGAAAGAACTGAAGTGAGCGAG
    GAAACAAACTCTTCTAGTCTGGATACACTTTTTGAAAAAGGTGAAGAAGCTCAAGAAAAT
    CCAGAGCTAACAGATGTCTTAAAAGAAACTGTAGATACAGCTGATGTGGATGGGACACAA
    GCAAGCCCAGCAGAAACTACTCCTGAACAAGTAAAAGGTGGAGTGAAAGAAAATACAAAA
    GACAGCATCGATGTTCCTGCTGCTTATCTTGAAAAAGCTGAAGGGAAAGGTCCTTTCACT
    GCCGGTGTAAACCAAGTAATTCCTTATGAACTATTCGCTGGTGATGGTATGTTAACTCGT
    CTATTACTAAAAGCTTCGGATAATGCTCCTTGGTCTGACAATGGTACTGCTAAAAATCCT
    GCTTTACCTCCTCTTGAAGGATTAACAAAAGGGAAATACTTCTATGAAGTAGACTTAAAT
    GGCAATACTGTTGGTAAACAAGGTCAAGCTTTAATTGATCAACTTCGCGCTAATGGTACT
    CAAACTTATAAAGCTACTGTTAAAGTTTACGGAAATAAAGACGGTAAAGCTGACTTGACT
    AATCTAGTTGCTACTAAAAATGTAGACATCAACATCAATGGATTAGTTGCTAAAGAAACA
    GTTCAAAAAGCCGTTGCAGACAACGTTAAAGACAGTATCGATGTTCCAGCAGCCTACCTA
    GAAAAAGCCAAGGGTGAAGGTCCATTCACAGCAGGTGTCAACCATGTGATTCCATACGAA
    CTCTTCGCAGGTGATGGTATGTTGACTCGTCTCTTGCTCAAGGCATCTGACAAGGCACCA
    TGGTCAGATAACGGTGACGCTAAAAACCCAGCCCTATCTCCACTAGGTGAAAACGTGAAG
    ACCAAAGGTCAATACTTCTATCAATTAGCCTTGGACGGAAATGTAGCTGGCAAAGAAAAA
    CAAGCGCTCATTGACCAGTTCCGAGCAAATGGTACTCAAACTTACAGCGCTACAGTCAAT
    GTCTATGGTAACAAAGACGGTAAACCAGACTTGGACAACATCGTAGCAACTAAAAAAGTC
    ACTATTAACATAAACGGTTTAATTTCTAAAGAAACAGTTCAAAAAGCCGTTGCAGACAAC
    GTTAAAGACAGTATCGATGTTCCAGCAGCCTACCTAGAAAAAGCCAAGGGTGAAGGTCCA
    TTCACAGCAGGTGTCAACCATGTGATTCCATACGAACTCTTCGCAGGTGATGGTATGTTG
    ACTCGTCTCTTGCTCAAGGCATCTGACAAGGCACCATGGTCAGATAACGGTGACGCTAAA
    AACCCAGCCCTATCTCCACTAGGTGAAAACGTGAAGACCAAAGGTCAATACTTCTATCAA
    TTAGCCTTGGACGGAAATGTAGCTGGCAAAGAAAAACAAGCGCTCATTGACCAGTTCCGA
    GCAAATGGTACTCAAACTTACAGCGCTACAGTCAATGTCTATGGTAACAAAGACGGTAAA
    CCAGACTTGGACAACATCGTAGCAACTAAAAAAGTCACTATTAACATAAACGGTTTAATT
    TCTAAAGAAACAGTTCAAAAAGCCGTTGCAGACAACGTTAAAGACAGTATCGATGTTCCA
    GCAGCCTACCTAGAAAAAGCCAAGGGTGAAGGTCCATTCACAGCAGGTGTCAACCATGTG
    ATTCCATACGAACTCTTCGCAGGTGATGGTATGTTGACTCGTCTCTTGCTCAAGGCATCT
    GACAAGGCACCATGGTCAGATAACGGTGACGCTAAAAACCCAGCCCTATCTCCACTAGGT
    GAAAACGTGAAGACCAAAGGTCAATACTTCTATCAATTAGCCTTGGACGGAAATGTAGCT
    GGCAAAGAAAAACAAGCGCTCATTGACCAGTTCCGAGCAAATGGTACTCAAACTTACAGC
    GCTACAGTCAATGTCTATGGTAACAAAGACGGTAAACCAGACTTGGACAACATCGTAGCA
    ACTAAAAAAGTCACTATTAACATAAACGGTTTAATTTCTAAAGAAACAGTTCAAAAAGCC
    GTTGCAGACAACGTTAAAGACAGTATCGATGTTCCAGCAGCCTACCTAGAAAAAGCCAAG
    GGTGAAGGTCCATTCACAGCAGGTGTCAACCATGTGATTCCATACGAACTCTTCGCAGGT
    GATGGTATGTTGACTCGTCTCTTGCTCAAGGCATCTGACAAGGCACCATGGTCAGATAAC
    GGTGACGCTAAAAACCCAGCCCTATCTCCACTAGGTGAAAACGTGAAGACCAAAGGTCAA
    TACTTCTATCAATTAGCCTTGGACGGAAATGTAGCTGGCAAAGAAAAACAAGCGCTCATT
    GACCAGTTCCGAGCAAATGGTACTCAAACTTACAGCGCTACAGTCAATGTCTATGGTAAC
    AAAGACGGTAAACCAGACTTGGACAACATCGTAGCAACTAAAAAAGTCACTATTAACATA
    AACGGTTTAATTTCTAAAGAAACAGTTCAAAAAGCCGTTGCAGACAACGTTAAAGACAGT
    ATCGATGTTCCAGCAGCCTACCTAGAAAAAGCCAAGGGTGAAGGTCCATTCACAGCAGGT
    GTCAACCATGTGATTCCATACGAACTCTTCGCAGGTGATGGCATGTTGACTCGTCTCTTG
    CTCAAGGCATCTGACAAGGCACCATGGTCAGATAACGGTGACGCTAAAAACCCAGCCCTA
    TCTCCACTAGGCGAAAACGTGAAGACCAAAGGTCAATACTTCTATCAATTAGCCTTGGAC
    GGAAATGTAGCTGGCAAAGAAAAACAAGCGCTCATTGACCAGTTCCGAGCAAATGGTACT
    CAAACTTACAGCGCTACAGTCAATGTCTATGGTAACAAAGACGGTAAACCAGACTTGGAC
    AACATCGTAGCAACTAAAAAAGTCACTATTAAGATAAATGTTAAAGAAACATCAGACACA
    GCAAATGGTTCATTATCACCTTCTAACTCTGGTTCTGGCGTGACTCCGATGAATCACAAT
    CATGCTACAGGTACTACAGATAGCATGCCTGCTGACACCATGACAAGTTCTACCAACACG
    ATGGCAGGTGAAAACATGGCTGCTTCTGCTAACAAGATGTCTGATACGATGATGTCAGAG
    GATAAAGCTATGCTACCAAATACTGGTGAGACTCAAACATCAATGGCAAGTATTGGTTTC
    CTTGGGCTTGCGCTTGCAGGTTTACTCGGTGGTCTAGGTTTGAAAAACAAAAAAGAAGAA
    AACTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1680
    1740
    1800
    1860
    1920
    1980
    2040
    2100
    2160
    2220
    2280
    2340
    2400
    2460
    2520
    2580
    2640
    2700
    2760
    2820
    2880
    2940
    3000
    3060
    3120
    3180
    3240
    3300
    3360
    3420
    3480
    3486

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPAT_0122 [new locus tag: EL263_RS00645 ]
  • symbol: SPAT_0122
  • description: hypothetical protein
  • length: 1161
  • theoretical pI: 5.14874
  • theoretical MW: 123442
  • GRAVY: -0.448493

⊟Function[edit | edit source]

  • TIGRFAM:
    gram-positive signal peptide, YSIRK family (TIGR01168; HMM-score: 45.3)
    and 8 more
    Unknown function Enzymes of unknown specificity AIR synthase-related protein, sll0787 family (TIGR04049; HMM-score: 31.8)
    Cell structure Cell envelope Other LPXTG cell wall anchor domain (TIGR01167; HMM-score: 23.5)
    Metabolism Transport and binding proteins Nucleosides, purines and pyrimidines ADP/ATP carrier protein family (TIGR00769; HMM-score: 14.7)
    isopropylmalate/citramalate/homocitrate synthases (TIGR02090; HMM-score: 12.9)
    Cellular processes Cellular processes Pathogenesis protein TolR (TIGR02801; HMM-score: 11.3)
    Metabolism Transport and binding proteins Other protein TolR (TIGR02801; HMM-score: 11.3)
    Cellular processes Cellular processes Sporulation and germination stage V sporulation protein T (TIGR02851; HMM-score: 10.5)
    Signal transduction Regulatory functions DNA interactions stage V sporulation protein T (TIGR02851; HMM-score: 10.5)
  • TheSEED: data available for D39, Hungary19A-6, TIGR4
  • PFAM:
    no clan defined SSURE; SSURE domain (PF11966; HMM-score: 1571.7)
    and 13 more
    DUF6527; Family of unknown function (DUF6527) (PF20137; HMM-score: 29.8)
    YSIRK_signal; YSIRK type signal peptide (PF04650; HMM-score: 28.7)
    USP47_C; Ubiquitin carboxyl-terminal hydrolase 47 C-terminal (PF19718; HMM-score: 25.2)
    Peptidase_CA (CL0125) Gln_amidase; Papain fold toxin 1, glutamine deamidase (PF15644; HMM-score: 25)
    no clan defined Gram_pos_anchor; LPXTG cell wall anchor motif (PF00746; HMM-score: 21.5)
    Flocculin; Flocculin repeat (PF00624; HMM-score: 18.9)
    NTF2 (CL0051) MlaC; MlaC protein (PF05494; HMM-score: 18.2)
    S11_L18p (CL0267) baeRF_family3; Bacterial archaeo-eukaryotic release factor family 3 (PF18845; HMM-score: 18)
    no clan defined PSMalpha; Phenol-soluble modulin alpha peptide family (PF17063; HMM-score: 13.3)
    DUF1735 (CL0594) DUF4973; Domain of unknown function (DUF4973) (PF16343; HMM-score: 11.9)
    no clan defined Pro_CA; Carbonic anhydrase (PF00484; HMM-score: 11.7)
    E-set (CL0159) LEA_2; Late embryogenesis abundant protein (PF03168; HMM-score: 9.3)
    no clan defined DUF2620; Protein of unknown function DUF2620 (PF10941; HMM-score: 9.2)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cellwall
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 10
    • Extracellular Score: 0
    • Internal Helices: 2
  • SignalP: Signal peptide SP(Sec/SPI) length 42 aa
    • SP(Sec/SPI): 0.930917
    • TAT(Tat/SPI): 0.064848
    • LIPO(Sec/SPII): 0.001806
    • Cleavage Site: CS pos: 42-43. VRA-DV. Pr: 0.9799
  • predicted transmembrane helices (TMHMM): 2

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: BBG38179 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MKFNPNQRYTRWSIRRLSVGVASVVVASGFFVLVGQPSSVRADVVNPTPGQVLPEETSGTKEGDLSEKPGDTVLTQAKPEGVTGNTNSLPTPTERTEVSEETNSSSLDTLFEKGEEAQENPELTDVLKETVDTADVDGTQASPAETTPEQVKGGVKENTKDSIDVPAAYLEKAEGKGPFTAGVNQVIPYELFAGDGMLTRLLLKASDNAPWSDNGTAKNPALPPLEGLTKGKYFYEVDLNGNTVGKQGQALIDQLRANGTQTYKATVKVYGNKDGKADLTNLVATKNVDININGLVAKETVQKAVADNVKDSIDVPAAYLEKAKGEGPFTAGVNHVIPYELFAGDGMLTRLLLKASDKAPWSDNGDAKNPALSPLGENVKTKGQYFYQLALDGNVAGKEKQALIDQFRANGTQTYSATVNVYGNKDGKPDLDNIVATKKVTININGLISKETVQKAVADNVKDSIDVPAAYLEKAKGEGPFTAGVNHVIPYELFAGDGMLTRLLLKASDKAPWSDNGDAKNPALSPLGENVKTKGQYFYQLALDGNVAGKEKQALIDQFRANGTQTYSATVNVYGNKDGKPDLDNIVATKKVTININGLISKETVQKAVADNVKDSIDVPAAYLEKAKGEGPFTAGVNHVIPYELFAGDGMLTRLLLKASDKAPWSDNGDAKNPALSPLGENVKTKGQYFYQLALDGNVAGKEKQALIDQFRANGTQTYSATVNVYGNKDGKPDLDNIVATKKVTININGLISKETVQKAVADNVKDSIDVPAAYLEKAKGEGPFTAGVNHVIPYELFAGDGMLTRLLLKASDKAPWSDNGDAKNPALSPLGENVKTKGQYFYQLALDGNVAGKEKQALIDQFRANGTQTYSATVNVYGNKDGKPDLDNIVATKKVTININGLISKETVQKAVADNVKDSIDVPAAYLEKAKGEGPFTAGVNHVIPYELFAGDGMLTRLLLKASDKAPWSDNGDAKNPALSPLGENVKTKGQYFYQLALDGNVAGKEKQALIDQFRANGTQTYSATVNVYGNKDGKPDLDNIVATKKVTIKINVKETSDTANGSLSPSNSGSGVTPMNHNHATGTTDSMPADTMTSSTNTMAGENMAASANKMSDTMMSEDKAMLPNTGETQTSMASIGFLGLALAGLLGGLGLKNKKEEN

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Inga Jensch, Gustavo Gámez, Michael Rothe, Sandra Ebert, Marcus Fulde, Daniela Somplatzki, Simone Bergmann, Lothar Petruschka, Manfred Rohde, Roland Nau, Sven Hammerschmidt
PavB is a surface-exposed adhesin of Streptococcus pneumoniae contributing to nasopharyngeal colonization and airways infections.
Mol Microbiol: 2010, 77(1);22-43
[PubMed:20444103] [WorldCat.org] [DOI] (I p)Ulrike Binsker, Thomas P Kohler, Krystin Krauel, Sylvia Kohler, Hansjörg Schwertz, Sven Hammerschmidt
Pneumococcal Adhesins PavB and PspC Are Important for the Interplay with Human Thrombospondin-1.
J Biol Chem: 2015, 290(23);14542-55
[PubMed:25897078] [WorldCat.org] [DOI] (I p)Sajida Kanwal, Inga Jensch, Gottfried J Palm, Mark Brönstrup, Manfred Rohde, Thomas P Kohler, Daniela Somplatzki, Werner Tegge, Howard F Jenkinson, Sven Hammerschmidt
Mapping the recognition domains of pneumococcal fibronectin-binding proteins PavA and PavB demonstrates a common pattern of molecular interactions with fibronectin type III repeats.
Mol Microbiol: 2017, 105(6);839-859
[PubMed:28657670] [WorldCat.org] [DOI] (I p)

Retrieved from "http://pneumowiki.med.uni-greifswald.de/index.php?title=SPAT_0122&oldid=51190"