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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 25-OCT-2019
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae ATCC 49619
- locus tag: SPAT_2087 [new locus tag: EL263_RS11035 ]
- pan locus tag?: PNEUPAN003906000
- symbol: ribX
- pan gene symbol?: thiX
- synonym:
- product: Riboflavin transport system permease protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SPAT_2087 [new locus tag: EL263_RS11035 ]
- symbol: ribX
- product: Riboflavin transport system permease protein
- replicon: chromosome
- strand: -
- coordinates: 2056998..2057756
- length: 759
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: AP018938 (2056998..2057756) NCBI
- BioCyc: see EL263_RS11035
- MicrobesOnline:
- PneumoBrowse for strain D39V: SPV_2026 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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721ATGAGAAACTTGAAAAGTATACTGAGACGACACATTAGTCTATTGGGCTTTCTCGGAGTA
TTGTCAATCTGGCAGTTAGCAGGTTTTCTTAAACTTCTCCCCAAGTTTATCCTGCCGACA
CCTCTTGAAATTCTCCAGCCCTTTGTTCGTGACAGAGAATTTCTCTGGCACCATAGCTGG
GCGACCTTGAGAGTGGCTTTACTGGGGCTGATTTTGGGAGTTTTGATTGCCTGTCTTATG
GCTGTACTCATGGATAGTTTGACTTGGCTCAATGACCTGATTTACCCTATGATGGTGGTC
ATTCAGACCATTCCGACCATTGCCATAGCTCCTATCCTGGTCTTGTGGCTAGGTTATGGG
ATTTTGCCCAAGATTGTCTTGATTATCTTAACGACAACCTTTCCCATCATCGTTAGTATT
TTGGACGGTTTTAGGCATTGCGACAAGGATATGCTGACCTTGTTTAGTCTGATGCGGGCC
AAGCCTTGGCAAATCCTGTGGCATTTTAAAATCCCAGTTAGCCTGCCTTACTTTTATGCA
GGTCTGAGGGTCAGTGTCTCCTACGCCTTTATCACAACTGTGGTATCTGAGTGGTTGGGA
GGTTTTGAAGGTCTTGGTGTTTATATGATTCAGTCTAAAAAACTGTTTCAGTATGATACC
ATGTTTGCCATTATTATTCTGGTGTCGATTATCAGTCTTTTGGGTATGAAGCTGGTCGAT
ATCAGTGAAAAATATGTGATTAAATGGAAACGTTCGTAG60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SPAT_2087 [new locus tag: EL263_RS11035 ]
- symbol: RibX
- description: Riboflavin transport system permease protein
- length: 252
- theoretical pI: 10.1944
- theoretical MW: 28891.1
- GRAVY: 0.887302
⊟Function[edit | edit source]
- TIGRFAM: Transport and binding proteins Anions nitrate ABC transporter, permease protein (TIGR01183; HMM-score: 50.9)Transport and binding proteins Anions phosphonate ABC transporter, permease protein PhnE (TIGR01097; HMM-score: 41.6)and 2 morecholine ABC transporter, permease protein (TIGR03416; HMM-score: 38.7)Transport and binding proteins Amino acids, peptides and amines amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family (TIGR01726; HMM-score: 8.1)
- TheSEED: data available for D39, Hungary19A-6, TIGR4
- PFAM: BPD_transp_1 (CL0404) BPD_transp_1; Binding-protein-dependent transport system inner membrane component (PF00528; HMM-score: 100.1)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 6
- DeepLocPro: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 0.9999
- Cell wall & surface Score: 0
- Extracellular Score: 0.0001
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.018906
- TAT(Tat/SPI): 0.003049
- LIPO(Sec/SPII): 0.011575
- predicted transmembrane helices (TMHMM): 6
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: BBG40090 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MRNLKSILRRHISLLGFLGVLSIWQLAGFLKLLPKFILPTPLEILQPFVRDREFLWHHSWATLRVALLGLILGVLIACLMAVLMDSLTWLNDLIYPMMVVIQTIPTIAIAPILVLWLGYGILPKIVLIILTTTFPIIVSILDGFRHCDKDMLTLFSLMRAKPWQILWHFKIPVSLPYFYAGLRVSVSYAFITTVVSEWLGGFEGLGVYMIQSKKLFQYDTMFAIIILVSIISLLGMKLVDISEKYVIKWKRS
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- data available for TIGR4
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_2026 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]