From PneumoWiki
Jump to navigation Jump to search
PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 30-JAN-2014

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae CGSP14
  • locus tag: SPCG_1093 [new locus tag: SPCG_RS05655 ]
  • pan locus tag?: PNEUPAN002447000
  • symbol: xseA
  • pan gene symbol?: xseA
  • synonym:
  • product: exodeoxyribonuclease VII large subunit

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPCG_1093 [new locus tag: SPCG_RS05655 ]
  • symbol: xseA
  • product: exodeoxyribonuclease VII large subunit
  • replicon: chromosome
  • strand: +
  • coordinates: 1065378..1066724
  • length: 1347
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    GTGGAGATGGAAAAGTATTTATCGGTAACAACTTTGACCAAGTATCTGAAAATGAAATTC
    GATAAAGACCCATACTTGGAACGGGTCTATTTAACTGGTCAAGTTTCCAACTTTCGTAAA
    CGACCTACTCACCAATATTTCTCCCTAAAGGATGACCATGCAGTTATTCAAGCGACCATC
    TGGTCTGGGATTTATCAGAAATTAGGGTTTGACCTGGAAGAAGGAATGAAGATCAATGTG
    ATTGGGCGTGTACAGGTCTATGAACCAAGTGGTAGCTACTCCATCATCATTGAAAAAGTT
    GAGCCTGATGGGGTTGGGGCGCTTGCGATTCAGTTTGAACAACTTAAGAAAAAATTGACA
    GAAGAAGGCCTGTTTCAAGAACGCTTCAAGCAAGCTCTGCCCCAATTTTCTAAGAGAATT
    GGGGTAGTAACCAGCCGTAGTGGAGCCGTTATTCGAGATATTATCACGACCGTCAGCAGG
    CGATTCCCAGGTGTTGACATCCTTCTTTATCCGACCAAGGTTCAAGGTGAAGGGGCTGCG
    GAGGAAATTGCTAGAAATATTGCGCGTGCTAATCAACGGGACGATTTGGATTTGCTCATT
    ATTGGTCGTGGAGGTGGTTCTATTGAGGATCTCTGGGCCTTTAACGAAGAAATTGTGGTA
    CGAGCTATTTTTGAATCTCGTTTGCCAGTTATCTCTAGTGTGGGGCATGAGACGGATGTG
    ACCTTGGCAGATTTTGTGGCAGATCGACGCGCTGCAACGCCAACAGCGGCGGCTGAACTG
    GCAACACCTGTGACCAAGTTGGATGTATTAGCTCATTTGCAAAATCAGGAAAAACGGATG
    GTAACGGCAGTCCGAAATGTTCTATCTAAGAAACAAGAGGCTTTGAAAAAATGCAGTCAG
    TCTGTTATCTTTAGACAACCTGAGCGCTTGTATGACGGTTATTTGCAACGCTTGGACCAA
    CTGCAACTGCGTTTGAAACAAAGTTTGCGAACTCGGATTTCTGATAACAAACAATTAGTT
    CAAGCAAGAACTCATCAATTAGTACAATTATCACCTGTTACCAAAATCCAACGCTATCAA
    GACCGTTTAGGACAGTTGGACAAGCTCTTAGGTAGCCAAATGGCGTTAGTTTATGACGCC
    AAGGTTGCTGAGGTCAAGCGACTTTCGGAAGCTTTGCTCATGTTGGATACTAGCCGAATC
    GTGGCGCGTGGTTATGCTATTGTCAAAAAAGAAGAGTCCGTTGTAGATTCGGTTGAGAGT
    TTGAAGAAAAAAGACCAAGTAACGCTTTTGATGCGAGATGGTCAAGTAGAATTAGAGGTT
    AAAGATGTCAAAACAAAAGAAATTTGA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1347

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPCG_1093 [new locus tag: SPCG_RS05655 ]
  • symbol: XseA
  • description: exodeoxyribonuclease VII large subunit
  • length: 448
  • theoretical pI: 9.80668
  • theoretical MW: 50824.4
  • GRAVY: -0.296429

⊟Function[edit | edit source]

  • TIGRFAM:
    Genetic information processing DNA metabolism Degradation of DNA exodeoxyribonuclease VII, large subunit (TIGR00237; EC 3.1.11.6; HMM-score: 478.6)
    and 1 more
    Genetic information processing Transcription Transcription factors RNA polymerase sigma factor RpoD (TIGR02393; HMM-score: 23.4)
  • TheSEED  :
    • Exodeoxyribonuclease VII large subunit (EC 3.1.11.6)
    DNA Metabolism DNA repair DNA repair, bacterial  Exodeoxyribonuclease VII large subunit (EC 3.1.11.6)
  • PFAM:
    no clan defined Exonuc_VII_L; Exonuclease VII, large subunit (PF02601; HMM-score: 315.5)
    and 3 more
    OB (CL0021) tRNA_anti_2; OB-fold nucleic acid binding domain (PF13742; HMM-score: 86.5)
    tRNA_anti-codon; OB-fold nucleic acid binding domain (PF01336; HMM-score: 42.2)
    HROB; Homologous recombination OB-fold protein (PF15072; HMM-score: 13.3)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 9.97
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 0.01
    • Extracellular Score: 0.02
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.8435
    • Cytoplasmic Membrane Score: 0.1472
    • Cell wall & surface Score: 0.0039
    • Extracellular Score: 0.0054
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.003476
    • TAT(Tat/SPI): 0.000101
    • LIPO(Sec/SPII): 0.000506
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: ACB90345 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MEMEKYLSVTTLTKYLKMKFDKDPYLERVYLTGQVSNFRKRPTHQYFSLKDDHAVIQATIWSGIYQKLGFDLEEGMKINVIGRVQVYEPSGSYSIIIEKVEPDGVGALAIQFEQLKKKLTEEGLFQERFKQALPQFSKRIGVVTSRSGAVIRDIITTVSRRFPGVDILLYPTKVQGEGAAEEIARNIARANQRDDLDLLIIGRGGGSIEDLWAFNEEIVVRAIFESRLPVISSVGHETDVTLADFVADRRAATPTAAAELATPVTKLDVLAHLQNQEKRMVTAVRNVLSKKQEALKKCSQSVIFRQPERLYDGYLQRLDQLQLRLKQSLRTRISDNKQLVQARTHQLVQLSPVTKIQRYQDRLGQLDKLLGSQMALVYDAKVAEVKRLSEALLMLDTSRIVARGYAIVKKEESVVDSVESLKKKDQVTLLMRDGQVELEVKDVKTKEI

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://pneumowiki.med.uni-greifswald.de/index.php?title=SPCG_1093&oldid=65492"