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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 30-JAN-2014
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae CGSP14
- locus tag: SPCG_1305 [new locus tag: SPCG_RS06745 ]
- pan locus tag?: PNEUPAN002181000
- symbol: SPCG_1305
- pan gene symbol?: —
- synonym:
- product: SNF2 family protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SPCG_1305 [new locus tag: SPCG_RS06745 ]
- symbol: SPCG_1305
- product: SNF2 family protein
- replicon: chromosome
- strand: -
- coordinates: 1287585..1293818
- length: 6234
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: CP001033 (1287585..1293818) NCBI
- BioCyc: see SPCG_RS06745
- MicrobesOnline: 5760639 MicrobesOnline
- PneumoBrowse for strain D39V:
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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6181ATGAAAGGAGCAAGTATGGAAGTAATGCAATTATTGGCTATGTTTCGTGGAACAATTCCA
AAAGATAGGGAGAAAATGACCCTATTTCTTCGTTATCAAGCGCAACATTTTGATGAGAAA
TGGCAAGACTTGGTAGAGAGTTTTTTGGCTGAAGAGGGCAAGATAGAAGAGATACCTCAT
GTGTATTCGTTTCATCAAGATATTATTTCTTTCCTAGAGGCTAGTTCTGAAAATAATGAC
CAAGATTTAGAAAGTTACACAAGAAATTTTGGACAAGCAGGTCTAAGTAAATTATCTCAA
TTAAGTAATTTTGAGAAAAACTTGGTTCTAGAAGTCGCAACCTATAACCTTTCCACTCGA
TTTTATATCCAATCTGAAAAAGAGAAGCTAACACCATTAAGTGAGCTTGTATTTCATCAG
AATCAGGATGTCAATTTAGTCAATGTCTATCGAGTTGCGAATAATCTATCTGACCGTATT
AGTAGAGATATAGAGGAATTTCTTCTAATGGTTGATTCCAAAGAACTAAAAAAAGAACTT
CTTGAGATTCATTTTGAAGAAAAAGAGGGAGATGTTCTAGCCTATTTGGGTTCAGAATTG
ATGGCTACTTTAGATACCGTTACGGATCTTGTCCATCATGAAGAAAACTACACGCAACTC
CCACTGACACAAAAGCTGAAGATTATTACTCATTTTGATGAAGTGAAAGCTATAAGAGAA
AAGTCTAATCAAGTAGAGGAATTTTTATCTCCTTCAAGTGATATTGAACAGGAAACGGAA
GAAACGAACTCTTTTTCTAATGTCGATAAAATTGTAGAAGAAGCTTTGAGGGAATATCCA
ATTGGTTCACAAGTAAGTTATAAAGGACAAGTATTTCAGTTAGTTTCGATTGAAAATGCT
CAGTTAAATGACTTGGTTCGCCTAGAACTATTCAGTGATTCCAACCAGTTATTTGAAGAG
AATCCTATCTTATACTTGAACAGTTTGGAAGAGATTGAACAAGTATTGTCTCATGTAGAA
CTTGAAAAAGAAGATTCAGAGATTGAGATTGATCCATCAAGTGAAAGTCAGGAAATAGAT
TTGTTTTCCTACCTGGAAGAAGATAATGAAAAGGAAAAGGACAAGGAAACAAAACCTTTA
ATTTCAGGTATAGAAGAGACGGATGTTACTGTTCAAGATTTTGTTTTTCCAGATGACTTA
GAGGACTTTTATCCTAAGACAAATCGAGAAAAGATTGAAACGAATATCGCCGCAATTGAA
CTTGTTAAAAGATTAGAAAAAGAGGGACGACAAGCGAATCCAGAAGAACAAGAACTACTA
GCCAAGTATGTCGGCTGGGGCGGTCTTGCCAATGAATTTTTCGATGAACTCAATCCAAAG
TATGAAACAGAACGTTTAACTCTTAAGAGTTTAGTAAGTAAATCAGAATACTCCACTATG
AAACAAAGTTCTCTCACAGCCTATTATACAGACCCAATGATTATTCGCCAGATTTGGCAA
AAGCTACTGGATGATGGTTTTGAGGGAGGAAGGATATTAGATCCTTCTATGGGGACTGGG
AACTTCTTTGCGGCTATGCCTAGAAGTATACGAGAGAGGTCAGAACTCTATGGAGTTGAA
TTAGACAGTGTGACAGGCGCAATCGCAAAACAACTACATCCTAATGCTTATATTGAAGTT
CGAGGATTTGAAGAAGTTCCCTTTCAAAATAATAGTTTTGATTTAGTCTTAACGAATGTT
CCATTTGGAAATTTTCGCATTGCCGATAAAAACTATGATAAACCTTACATGATTCACGAC
TACTTTATCAAACACTCACTTGATTTAGTAAGAGACGGAGGGCAGGTGTCGATTATCTCT
TCTATTGGCACAATGGATAAGCGGACAGATAATGTCTTACAAGAGATTAAATCTAGCACT
CATTTTTTAGGGGGAGTTCGGTTGCCGGATACGGCTTTTAAAAAGATTGCAGGTACTCGA
GTGACCACAGATCTCCTCTTCTTTCAAAAGGATCAAGCAAAGAATCTTAATGAGGAGGAA
CTTGTCTTTAGTGGCTCTATTCCCTTTGAGGAGGATAAGCGTGTCTGGATCAATCCTTAT
TTTGATGGGAAATACAATACACAAGTTTTGGGTGAATATGAGGTACGTAATTTTAATGGA
GGAACCCTCAATGTTAAGGGGGAATCAGAAACATTAGCTACTGACATAATGAAAGCATTA
GAGAATGTAGAAGCACCTAAACAAATTGACAATTCTTTGAAAGCACCTGTTTTTATCCAA
GAAGAAGTGGATAATTCTATCCCAAGTCATATACGTGAGAACTTAGCGCTATATTCTTTT
GGATATGAGGGAAATCAAATTTATTATCGAGATACGCATGGCATTCGGAAAAGTTCAAAA
GTAGACGAAATTAGTTATTATGTAGATGAGAAGGGAGATTTTAAAGCTTGGGACAGTTCC
TTGTCTGAACATAAAATAGATCGATTCGTGCAACTTCATTTGACAGATGAGGAAGCACTA
GATGTATACAAGTCAGAAGAAGCGAGTAAAAGAGGGAAATATAAGGGCTTGTTCAAAAAA
ACGGTCTTTTATGAAAGCCCCTTATCGGATAAGGATATTAGTCGCATTAAGGGCATGGTT
GATTTGAGAGAGACCTATCAAGCCTTAATTGAAATTCAACGCCATCCAGATTATAGTCGG
ACAGATTTTCAGGTATTACTTAGTAAACTCAATCGTGACTATGATCGGTTTGTAAGGCAA
TTTGGATACTTGAATGTCTCAGTCAATCGGAACTTATTTGATAGTGACGATAAGTATTCT
TTACTAGCAAGTTTAGAAGATGAATACATTGATTCTAAAGATCAGAAAGTAAAATATAAA
AAATCTTTAGCCTTTGAGAAAGCATTGGTTAGACCGGAGAGAGTGATTACAAGAGTTTCA
ACGGCTTTAGATGCCTTAAACTCCAGTTTATCAGATGGTAGAGGGGTTGATATAGACTAT
ATGGTATCAATTTACCCTGAACATAGCCAAGCTGCTATTTTAGATGAGTTAGGTGACCAG
GTTTTAATGGATCCAGAAAGCTATTTAAGAGGAGAAAGAAAATATCTTTCTAAGAACCAA
TTTTTATCAGGAGACATTCTCAACAAGATAGAAGTAGTTCAACTATTAGTGGAGGAAAAC
AACCAAGAATGTGACTGGTCCCATGCTTTAGATTTGTTAGAATCTGTTCGCCCTCCACGG
ATTCATCTGGCAGATATTGAGTTTAAAATAGGGTCACGTTGGATTCCTCAATCCGTTTAT
GGTAAATTTGCCTTTGAATGTTTTACTAATCGTAAATTTGAATTGTCTTCGCCAGATGTT
AAACAAGTCATTGAAGTGAATCCTGTTGATGGGCAGGTTCATTTAAGGACATCATTTGCT
TATCGCTATCCAAGTGCCAAAGATAGTAGTCTTGGAGTCAGTGGGTCACGTTATGATACA
GGAAGAAAGATATTTGAGAATTTACTAAATTCAAACCAACCGACGATTACTATGACTGTT
ACGGAAGGAGAAAAGAAAAAGACCATCACAGATTTGGAAAAAACATCTGTTCTAAGAGCA
AAAGAGCAGTATTTACAAGAGCTCTTTCAAGAATTTGTCTCACGGTATCCAGAAGTCCAA
CAAGTCATTGAGGAAAGCTATAATCGTCTTTATAATCGAACGGTTAGTCGAGAGTATGAT
GGTAGCCATCTAGTCATTGATGGCTTGGCACAAAACATCAGTCTTCGTCCTCATCAAGAG
AATGCCATTCAAAGAATCGTAGAAGAAAAAAGAGCTTTATTAGCTCATGAGGTAGGTTCA
GGAAAGACCTTGACCATGCTTGGTGCTGGGTTTAAATTAAAGGAGCTGGGGATGGTTCAT
AAGCCCTTGTATGTGGTGCCCTCTAGTTTGTCTGCTCAGTTTGGCCAAGAAATCATGAAA
TTTTTCCCCACTAAAAAAGTCTTTGTGACCACTAAGAAAGATTTTGTTAAGGCGAGAAGA
AAACAATTTGTGTCACGTATTATTACAGGAGATTACGATGCCATTGTCATTGGGGATTCT
CAATTTGAAAAAATCCCTGTCAGTAAGGAAAGACAGATGAATTATATCGAGGATAAACTC
AATGAACTACGAGAGATTAAAACACATTCTGAAAATAAGTATACTGTTAAAGAAGCAGAG
CAATCAATAAGTGGTCTAGAGAAACAATTGGAAGAACTCCAACGCTTTAATCGTGATAGT
TTTATTGATTTTGAGAACTTAGGAATTGATTTTCTCTTTGTGGATGAAGCACATCACTTT
AAAAATATTCGTCCCATTACTGGACTTGGGAATGTAGCAGGAATTACCAATACAACTTCT
AAGAAGAACGTGGATATGGAAATGAAGGTTCGACAGATTCAGGAAGAACATGATTTTAAA
AATATTGTCTTTGCGACAGGAACACCTGTTTCCAATTCTATTAGTGAGTTGTACACTATG
ATGAACTACATTCAACCGGATATCTTAAAACGCTATCAAGTTGATTATTTTGACTCTTGG
GTAGGTGCTTTTGGAGAAATTCAAAACTCTATGGAATTAGCTCCTACAGGGGATAAGTAC
CAACCTAAGAAACGATTTAAAAAGTTTGTCAATCTACCTGAGTTGATGAAAATTTATAAA
GAAACAGCCGACATTCAAACACAAGATATGTTGGATTTACCTGTTCCAGAAGCCCATATT
ATTCCTATTGAGAGTGAATTAACTGAAAACCAGAAACTCTATCTAGAAGAATTGGTTATG
CGTTCAGATGCGGTTAAATGTGGAACAGTTGATCCGAGCCAGGATAACATGTTAAAAATT
ACGGGTGAGGCACGAAAACTAGCAATTGATATGCGTTTATTGGACTCTAGCTATAGTCTA
GCAGACAATCATAAACTACTTCAGGTAGTGGATAATGTTGAAAGAATTTATCGTGAGGGA
ATGGAAAATAAGGCTACTCAGATGATTTTTTCAGATATTGGAACACCTAAGAAAAAGGAC
AATGGCTTTGATGTTTATTCTGAGGTTAAGGCTTTATTAGTTGATAGAGGAATCCCTAGT
AAGGAAATTGCCTTTGTACATGATGCCAATAGTGATGAAAAGAAGAATAGTTTGTCTCGA
AAGGTCAATGCAGGAGAGGTGCGGATTCTCCTTGCCTCAACTGAAAAAGGAGGAACAGGT
TTAAATGTTCAGAGCAAGATGAAAGCAGTTCACCACCTGGATGTACCGTGGAGACCAAGT
GACATTCAGCAACGCAATGGACGTATTATCCGACAGGGAAATGAAAACAAGGAAGTGGAT
ATTTACCACTATATTACCAAAGGTTCGTTTGATAATTATCTATGGGCAACTCAGGAGAAC
AAACTCCGTTATATTAAGCAAATTATGACTTCTAAGGAGCCAATTCGTGCTGCAGAAGAT
ATTGATGAGCAGACCATGACAGCTTCTGATTTTAAGGCACTAGCAACAGGTAATCCTTAT
CTCAAACATAAGATGGAATTGGAGAATGATCTAACCCTATTAGAAAACCAAAGACGCGCC
TTTCAACGCAGCAAGGATCACTATCGTCATACAATCTCTTACTGTGAAGAAAATATGCCC
ATTCTTGAAAAACGATTAAGTAAGTATGAATGCGACATTCAACAGTCTGAAATGTCGAAA
GACCAGGCATTTTCTATGACAGTAGGTAAGCAGGCTTTTGAGCAACGAGCTGAAGCAGGT
GAATCCCTACACCGTCTTATCCGTCATAATCAAGCTGACAGCAAAGAATTTCGTACCCTA
GCCAGTTATCGAGGATTTGACATTAAAATGCTTAGTCTTCCAATAAATCAACCTCTTCCT
GAAACCTTCTCTGTTAAGATTGTAGGAGAAAATCAGTATTCTGTCAGTTTAGATTTGTAT
TCTCCTTTGGGGACAATTCAAAGGCTTCAGCATACGATTGATCACATTAAAGATGACCAA
GTGAAAACACAGAACTTATTGGATGAATTAAAGGATAAATTGACTACTGCTAAGGTAGAA
ATTGAGAAAAATTTTCCAAAGGAAGAGGACTATCAAACAAAAAAGGCCGAATACGATGTA
CTCGCGCCATTGATTGAAACAGAAACGGATTTAGATATTATAGATCAAGCCTTAAGACAA
TTCCATGAAAAAGGAAACGAAAAGCAGGAACAACTTTCTTTTGAATTGGATTAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SPCG_1305 [new locus tag: SPCG_RS06745 ]
- symbol: SPCG_1305
- description: SNF2 family protein
- length: 2077
- theoretical pI: 4.82005
- theoretical MW: 239512
- GRAVY: -0.585123
⊟Function[edit | edit source]
- TIGRFAM: DNA phosphorothioation system restriction enzyme (TIGR04095; HMM-score: 27.8)and 1 moreDNA metabolism DNA replication, recombination, and repair ATP-dependent DNA helicase, RecQ family (TIGR00614; EC 3.6.4.12; HMM-score: 13.3)
- TheSEED :
- SNF2 family protein
- PFAM: P-loop_NTPase (CL0023) SNF2-rel_dom; SNF2-related domain (PF00176; HMM-score: 44.9)ResIII; Type III restriction enzyme, res subunit (PF04851; HMM-score: 43.8)and 7 moreHelicase_C; Helicase conserved C-terminal domain (PF00271; HMM-score: 32.6)NADP_Rossmann (CL0063) Methyltransf_25; Methyltransferase domain (PF13649; HMM-score: 23.2)Methyltransf_11; Methyltransferase domain (PF08241; HMM-score: 22.8)P-loop_NTPase (CL0023) DEAD; DEAD/DEAH box helicase (PF00270; HMM-score: 19.3)THBO-biosyn (CL0334) Uricase; Uricase (PF01014; HMM-score: 14.9)no clan defined PX; PX domain (PF00787; HMM-score: 10)Med9; RNA polymerase II transcription mediator complex subunit 9 (PF07544; HMM-score: 7.5)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- DeepLocPro: Cytoplasmic
- Cytoplasmic Score: 0.6809
- Cytoplasmic Membrane Score: 0.0493
- Cell wall & surface Score: 0.0921
- Extracellular Score: 0.1778
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.006004
- TAT(Tat/SPI): 0.000315
- LIPO(Sec/SPII): 0.001052
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: ACB90557 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MKGASMEVMQLLAMFRGTIPKDREKMTLFLRYQAQHFDEKWQDLVESFLAEEGKIEEIPHVYSFHQDIISFLEASSENNDQDLESYTRNFGQAGLSKLSQLSNFEKNLVLEVATYNLSTRFYIQSEKEKLTPLSELVFHQNQDVNLVNVYRVANNLSDRISRDIEEFLLMVDSKELKKELLEIHFEEKEGDVLAYLGSELMATLDTVTDLVHHEENYTQLPLTQKLKIITHFDEVKAIREKSNQVEEFLSPSSDIEQETEETNSFSNVDKIVEEALREYPIGSQVSYKGQVFQLVSIENAQLNDLVRLELFSDSNQLFEENPILYLNSLEEIEQVLSHVELEKEDSEIEIDPSSESQEIDLFSYLEEDNEKEKDKETKPLISGIEETDVTVQDFVFPDDLEDFYPKTNREKIETNIAAIELVKRLEKEGRQANPEEQELLAKYVGWGGLANEFFDELNPKYETERLTLKSLVSKSEYSTMKQSSLTAYYTDPMIIRQIWQKLLDDGFEGGRILDPSMGTGNFFAAMPRSIRERSELYGVELDSVTGAIAKQLHPNAYIEVRGFEEVPFQNNSFDLVLTNVPFGNFRIADKNYDKPYMIHDYFIKHSLDLVRDGGQVSIISSIGTMDKRTDNVLQEIKSSTHFLGGVRLPDTAFKKIAGTRVTTDLLFFQKDQAKNLNEEELVFSGSIPFEEDKRVWINPYFDGKYNTQVLGEYEVRNFNGGTLNVKGESETLATDIMKALENVEAPKQIDNSLKAPVFIQEEVDNSIPSHIRENLALYSFGYEGNQIYYRDTHGIRKSSKVDEISYYVDEKGDFKAWDSSLSEHKIDRFVQLHLTDEEALDVYKSEEASKRGKYKGLFKKTVFYESPLSDKDISRIKGMVDLRETYQALIEIQRHPDYSRTDFQVLLSKLNRDYDRFVRQFGYLNVSVNRNLFDSDDKYSLLASLEDEYIDSKDQKVKYKKSLAFEKALVRPERVITRVSTALDALNSSLSDGRGVDIDYMVSIYPEHSQAAILDELGDQVLMDPESYLRGERKYLSKNQFLSGDILNKIEVVQLLVEENNQECDWSHALDLLESVRPPRIHLADIEFKIGSRWIPQSVYGKFAFECFTNRKFELSSPDVKQVIEVNPVDGQVHLRTSFAYRYPSAKDSSLGVSGSRYDTGRKIFENLLNSNQPTITMTVTEGEKKKTITDLEKTSVLRAKEQYLQELFQEFVSRYPEVQQVIEESYNRLYNRTVSREYDGSHLVIDGLAQNISLRPHQENAIQRIVEEKRALLAHEVGSGKTLTMLGAGFKLKELGMVHKPLYVVPSSLSAQFGQEIMKFFPTKKVFVTTKKDFVKARRKQFVSRIITGDYDAIVIGDSQFEKIPVSKERQMNYIEDKLNELREIKTHSENKYTVKEAEQSISGLEKQLEELQRFNRDSFIDFENLGIDFLFVDEAHHFKNIRPITGLGNVAGITNTTSKKNVDMEMKVRQIQEEHDFKNIVFATGTPVSNSISELYTMMNYIQPDILKRYQVDYFDSWVGAFGEIQNSMELAPTGDKYQPKKRFKKFVNLPELMKIYKETADIQTQDMLDLPVPEAHIIPIESELTENQKLYLEELVMRSDAVKCGTVDPSQDNMLKITGEARKLAIDMRLLDSSYSLADNHKLLQVVDNVERIYREGMENKATQMIFSDIGTPKKKDNGFDVYSEVKALLVDRGIPSKEIAFVHDANSDEKKNSLSRKVNAGEVRILLASTEKGGTGLNVQSKMKAVHHLDVPWRPSDIQQRNGRIIRQGNENKEVDIYHYITKGSFDNYLWATQENKLRYIKQIMTSKEPIRAAEDIDEQTMTASDFKALATGNPYLKHKMELENDLTLLENQRRAFQRSKDHYRHTISYCEENMPILEKRLSKYECDIQQSEMSKDQAFSMTVGKQAFEQRAEAGESLHRLIRHNQADSKEFRTLASYRGFDIKMLSLPINQPLPETFSVKIVGENQYSVSLDLYSPLGTIQRLQHTIDHIKDDQVKTQNLLDELKDKLTTAKVEIEKNFPKEEDYQTKKAEYDVLAPLIETETDLDIIDQALRQFHEKGNEKQEQLSFELD
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription[edit | edit source]
- transcription start site:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V:
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]