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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 30-JAN-2014

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae CGSP14
  • locus tag: SPCG_1925 [new locus tag: SPCG_RS10095 ]
  • pan locus tag?: PNEUPAN003591000
  • symbol: SPCG_1925
  • pan gene symbol?: rpoB
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPCG_1925 [new locus tag: SPCG_RS10095 ]
  • symbol: SPCG_1925
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1909666..1912140
  • length: 2475
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    1861
    1921
    1981
    2041
    2101
    2161
    2221
    2281
    2341
    2401
    2461
    GTGACTCCTGCAGATATCCTTGCTGAGATGAGCTACTTCCTCAACTTGGCTGAAGGACTT
    GGCCGTGTAGATGATATCGACCACCTTGGAAATCGTCGTATCCGTGCGGTTGGTGAATTG
    CTTGCCAACCAAGTACGTTTGGGACTTTCTCGTATGGAACGTAATGTCCGTGAACGTATG
    TCTGTTCAGGACAATGAAGTCTTGACACCACAACAAATTATCAATATCCGTCCTGTAACA
    GCTGCGGTTAAAGAATTCTTTGGTTCATCACAGTTGTCACAGTTCATGGACCAACACAAC
    CCGCTTTCTGAGTTGTCTCACAAACGCCGTTTGTCAGCCTTAGGACCTGGTGGTTTGACT
    CGTGACCGTGCCGGATATGAAGTACGTGACGTGCACTACACTCACTATGGTCGTATGTGT
    CCAATCGAGACACCTGAAGGACCTAACATCGGTTTGATCAATAACTTGTCATCTTACGGA
    CACTTGAACAAATATGGTTTTGTTCAAACACCATACCGTAAGGTTGACCGTGAAACAGGT
    GTTGTCACGAACGAAATTGTTTGGTTGACAGCTGATGAAGAAGATGAATATACTGTAGCT
    CAGGCTAACTCTCGTCTGAATGAAGATGGAACCTTTGCTGAGAAGATTGTCATGGGACGT
    CACCAAGGGGTCAACCAAGAGTATCCAGCTAATATTGTTGACTACATGGACGTTTCACCA
    AAACAGGTAGTTGCCGTTGCGACAGCATGTATTCCTTTCTTGGAAAACGATGACTCCAAC
    CGTGCCCTCATGGGAGCCAATATGCAACGTCAGGCTGTGCCATTGATTAATCCTCAGGCA
    CCTTACGTTGGTACTGGTATGGAATACCAAGCAGCCCACGATTCTGGTGCGGCTGTGATT
    GCTCAGTATGATGGTAAAGTTACTTACGCAGATGCTGACAAGGTAGAAGTTCGTCGTGAA
    GATGGTTCATTGGATGTTTACCACATCCAAAAATTCCGTCGTTCAAACTCAGGTACTGCT
    TACAACCAACGCACTCTCGTAAAAGTTGGTGATGTCGTTGAAAAAGGCGATTTCATCGCT
    GACGGACCTTCTATGGAAAATGGAGAAATGGCGCTTGGACAAAACCCAATCGTTGCCTAC
    ATGACTTGGGAAGGTTACAACTTCGAGGATGCCGTTATCATGAGCGAACGCTTGGTGAAG
    GACGATGTCTACACATCTGTTCACCTTGAAGAATACGAATCAGAAACGCGCGATACAAAG
    CTTGGGCCTGAAGAAATCACTCGCGAAATTCCAAACGTTGGTGAAGATGCCCTCAAAGAC
    CTTGACGAAATGGGGATTATCCGTATTGGTGCTGAGGTTAAAGAAGGTGATATTCTTGTA
    GGTAAAGTAACACCTAAGGGTGAGAAAGATCTTTCAGCTGAAGAACGTCTCTTGCACGCT
    ATCTTTGGAGACAAGTCTCGTGAAGTGCGTGATACTTCTCTTCGTGTACCACACGGTGCC
    GATGGTGTCGTTCGTGATGTTAAGATCTTTACACGTGTAAATGGAGATGAGTTGCAATCA
    GGTGTTAACATGTTGGTTCGTGTTTACATCGCTCAAAAACGTAAGATTAAGGTCGGAGAT
    AAAATGGCCGGACGTCACGGAAACAAAGGGGTTGTCTCTCGTATCGTTCCTGTAGAAGAC
    ATGCCTTACCTTCCAGACGGAACTCCAGTCGACATCATGTTGAACCCACTTGGGGTGCCA
    TCACGTATGAATATCGGTCAGGTTATGGAGCTTCACCTTGGTATGGCAGCTCGTACTCTT
    GGTATTCACATTGCGACACCAGTCTTTGATGGAGCAAGTTCTGAAGATCTTTGGTCAACT
    GTTAAAGAAGCAGGTATGGATAGCGATGCCAAGACAATCCTTTACGATGGACGTACAGGT
    GAACCATTTGATAACCGTGTTTCTGTTGGAGTCATGTACATGATCAAACTCCACCACATG
    GTTGACGATAAATTGCACGCGCGTTCAGTCGGACCTTACTCAACTGTTACCCAACAACCA
    CTCGGAGGTAAAGCTCAGTTTGGTGGACAACGTTTCGGTGAGATGGAGGTTTGGGCTCTT
    GAAGCCTACGGTGCGTCAAATGTCCTTCAAGAAATCTTGACTTACAAGTCGGACGATATC
    AACGGACGTTTGAAAGCCTATGAAGCTATTACAAAAGGCAAACCAATTCCAAAACCAGGT
    GTTCCAGAATCCTTCCGAGTTCTTGTCAAAGAATTGCAATCTCTTGGTCTTGACATGCGT
    GTCCTAGACGAAGATGACCAAGAAGTGGAACTTCGCGACTTGGATGAAGGAATGGACGAA
    GATGTCATCCACGTAGATGACCTTGAAAAAGCCCGCGAAAAAGCAGCCCAAGAGGCTAAA
    GCAGCCTTTGAAGCTGAAGAAGCTGAGAAAGCAACAAAAGCGGAAGCAACAGAAGAAGCT
    GCTGAACAAGAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1680
    1740
    1800
    1860
    1920
    1980
    2040
    2100
    2160
    2220
    2280
    2340
    2400
    2460
    2475

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPCG_1925 [new locus tag: SPCG_RS10095 ]
  • symbol: SPCG_1925
  • description: hypothetical protein
  • length: 824
  • theoretical pI: 4.6624
  • theoretical MW: 91399.3
  • GRAVY: -0.450971

⊟Function[edit | edit source]

  • TIGRFAM:
    Genetic information processing Transcription DNA-dependent RNA polymerase DNA-directed RNA polymerase, beta subunit (TIGR02013; EC 2.7.7.6; HMM-score: 1375.5)
    and 1 more
    DNA-directed RNA polymerase subunit B (TIGR03670; EC 2.7.7.6; HMM-score: 296.8)
  • TheSEED  :
    • DNA-directed RNA polymerase beta subunit (EC 2.7.7.6)
    RNA Metabolism Transcription RNA polymerase bacterial  DNA-directed RNA polymerase beta subunit (EC 2.7.7.6)
    and 1 more
    Virulence Virulence - no subcategory Mycobacterium virulence operon involved in DNA transcription  DNA-directed RNA polymerase beta subunit (EC 2.7.7.6)
  • PFAM:
    LEF-8-like (CL0410) RNA_pol_Rpb2_6; RNA polymerase Rpb2, domain 6 (PF00562; HMM-score: 540.8)
    and 8 more
    no clan defined RNA_pol_Rpb2_3; RNA polymerase Rpb2, domain 3 (PF04565; HMM-score: 97.6)
    RNA_pol_Rpb2_7; RNA polymerase Rpb2, domain 7 (PF04560; HMM-score: 91.4)
    RNA_pol_Rpb2_45; RNA polymerase beta subunit external 1 domain (PF10385; HMM-score: 80.9)
    RNA_pol_Rpb2_2; RNA polymerase Rpb2, domain 2 (PF04561; HMM-score: 27)
    RNA_pol_Rpb2_1; RNA polymerase beta subunit (PF04563; HMM-score: 24)
    Hybrid (CL0105) Peptidase_M23; Peptidase family M23 (PF01551; HMM-score: 19.9)
    no clan defined NusG_add; NusG additional domain (PF18298; HMM-score: 15.3)
    Hybrid (CL0105) Biotin_lipoyl_2; Biotin-lipoyl like (PF13533; HMM-score: 13.5)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 9.97
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 0.01
    • Extracellular Score: 0.02
    • Internal Helices: 0
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.002613
    • TAT(Tat/SPI): 0.000562
    • LIPO(Sec/SPII): 0.00063
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MTPADILAEMSYFLNLAEGLGRVDDIDHLGNRRIRAVGELLANQVRLGLSRMERNVRERMSVQDNEVLTPQQIINIRPVTAAVKEFFGSSQLSQFMDQHNPLSELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSYGHLNKYGFVQTPYRKVDRETGVVTNEIVWLTADEEDEYTVAQANSRLNEDGTFAEKIVMGRHQGVNQEYPANIVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLINPQAPYVGTGMEYQAAHDSGAAVIAQYDGKVTYADADKVEVRREDGSLDVYHIQKFRRSNSGTAYNQRTLVKVGDVVEKGDFIADGPSMENGEMALGQNPIVAYMTWEGYNFEDAVIMSERLVKDDVYTSVHLEEYESETRDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEVKEGDILVGKVTPKGEKDLSAEERLLHAIFGDKSREVRDTSLRVPHGADGVVRDVKIFTRVNGDELQSGVNMLVRVYIAQKRKIKVGDKMAGRHGNKGVVSRIVPVEDMPYLPDGTPVDIMLNPLGVPSRMNIGQVMELHLGMAARTLGIHIATPVFDGASSEDLWSTVKEAGMDSDAKTILYDGRTGEPFDNRVSVGVMYMIKLHHMVDDKLHARSVGPYSTVTQQPLGGKAQFGGQRFGEMEVWALEAYGASNVLQEILTYKSDDINGRLKAYEAITKGKPIPKPGVPESFRVLVKELQSLGLDMRVLDEDDQEVELRDLDEGMDEDVIHVDDLEKAREKAAQEAKAAFEAEEAEKATKAEATEEAAEQE

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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