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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 24-JAN-2021

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae CGSP14
  • locus tag: SPCG_RS10310 [old locus tag: SPCG_1968 ]
  • pan locus tag?: PNEUPAN003541000
  • symbol: SPCG_RS10310
  • pan gene symbol?: —
  • synonym:
  • product: ABC transporter permease

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPCG_RS10310 [old locus tag: SPCG_1968 ]
  • symbol: SPCG_RS10310
  • product: ABC transporter permease
  • replicon: chromosome
  • strand: -
  • coordinates: 1948886..1949623
  • length: 738
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    ATGAAACGATGGATCGCACTAAACAAGATAGAATTTCTATTGACCAAACGACAATTAGTC
    TATTATCTATTATCCGTAGGGATGCCGACAGCCTTCTATTTATTCTTTTCAGGCATGTAC
    CAGGACACACCTGGTGGACCAGCTAATTTTATGCGTGATTACCTCATCTCCATGACGGCT
    TTTTCCATGATGTCGACAGCTATCTTTTCATTCCCAGCTGTTTTACATACAGATAAAATC
    AACAACTGGCAGAAAACATTACGTCATAGTCCTATAAATATGGTAGAATATTATCTATCA
    AAGATAACAAGTATGCTGGTTGATTATTTGGTTTCAATCTTGGTGGTTTTCTCAGTTGGG
    CATTTTGTAAGAGGTGTAGAGATGCCTCTAGGAAGCTGGGTTGGGGCTGCGATTTTGCTT
    ATTTTGGGAAGTATTGCTTTTGTAGCGCTTGGCTTGACCTTGACGCTCTTACCAACTAGT
    CAGCTGATGTCTGTCGTGGGCAATCTTCTTTACCTTGGCTTGGCTGTTTTAGGTGGGCTC
    TGGATGCCTATCTCTTTATTTCCAGACTGGATGCAAGCAGTCGGTAAGTGTCTCCCGACC
    TATCAGTTGATGGAGTTACTCAAGACCTTCTTAAACAAGGGTGGCATCAATCTATCAGCC
    ACAGTTTATCTACTTGTTTTTTCAGCAGTTTTATTTGGTTTGACTATTTACCTTCAAGGT
    CATAAGGAGAATGCTTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    738

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPCG_RS10310 [old locus tag: SPCG_1968 ]
  • symbol: SPCG_RS10310
  • description: ABC transporter permease
  • length: 245
  • theoretical pI: 9.55153
  • theoretical MW: 27335.5
  • GRAVY: 0.697143

⊟Function[edit | edit source]

  • TIGRFAM:
    ABC transporter efflux protein, DrrB family (TIGR00025; HMM-score: 27.5)
    Metabolism Transport and binding proteins Other daunorubicin resistance ABC transporter membrane protein (TIGR01247; HMM-score: 22.4)
    and 1 more
    Metabolism Transport and binding proteins Other pigment precursor permease (TIGR00955; HMM-score: 8)
  • TheSEED: see SPCG_1968
  • PFAM:
    ABC-2 (CL0181) ABC2_membrane; ABC-2 type transporter (PF01061; HMM-score: 57.2)
    ABC2_membrane_3; ABC-2 family transporter protein (PF12698; HMM-score: 52.3)
    and 7 more
    ABC2_membrane_4; ABC-2 family transporter protein (PF12730; HMM-score: 23.6)
    no clan defined PrgI; PrgI family protein (PF12666; HMM-score: 15.5)
    CPA_AT (CL0064) Mem_trans; Membrane transport protein (PF03547; HMM-score: 14)
    no clan defined YrvL; Regulatory protein YrvL (PF14184; HMM-score: 13.2)
    ABC-2 (CL0181) ABC2_membrane_5; ABC-2 family transporter protein (PF13346; HMM-score: 11.6)
    ABC2_membrane_2; ABC-2 family transporter protein (PF12679; HMM-score: 9.5)
    no clan defined MnhB; Domain related to MnhB subunit of Na+/H+ antiporter (PF04039; HMM-score: 7.2)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 6
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.015546
    • TAT(Tat/SPI): 0.000957
    • LIPO(Sec/SPII): 0.007266
  • predicted transmembrane helices (TMHMM): 6

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MKRWIALNKIEFLLTKRQLVYYLLSVGMPTAFYLFFSGMYQDTPGGPANFMRDYLISMTAFSMMSTAIFSFPAVLHTDKINNWQKTLRHSPINMVEYYLSKITSMLVDYLVSILVVFSVGHFVRGVEMPLGSWVGAAILLILGSIAFVALGLTLTLLPTSQLMSVVGNLLYLGLAVLGGLWMPISLFPDWMQAVGKCLPTYQLMELLKTFLNKGGINLSATVYLLVFSAVLFGLTIYLQGHKENA

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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