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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 24-JAN-2021

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae CGSP14
  • locus tag: SPCG_RS11255 [old locus tag: SPCG_2128 ]
  • pan locus tag?: PNEUPAN002576000
  • symbol: SPCG_RS11255
  • pan gene symbol?: eabC
  • synonym:
  • product: NPCBM/NEW2 domain-containing protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPCG_RS11255 [old locus tag: SPCG_2128 ]
  • symbol: SPCG_RS11255
  • product: NPCBM/NEW2 domain-containing protein
  • replicon: chromosome
  • strand: -
  • coordinates: 2121431..2124448
  • length: 3018
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: NC_010582 (2121431..2124448) NCBI
  • BioCyc: SPCG_RS11255 BioCyc
  • MicrobesOnline: see SPCG_2128
  • PneumoBrowse for strain D39V:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    1861
    1921
    1981
    2041
    2101
    2161
    2221
    2281
    2341
    2401
    2461
    2521
    2581
    2641
    2701
    2761
    2821
    2881
    2941
    3001
    ATGGAAAGTAAAAAAATAGCAAAACAGATTTTAATAGCTACGGCTGTTTTAACAAGTTTT
    TTAGGAAGTAATTTGGTTTATGCAGATGTAGTTCAAAGTAATTCTAATAACAGAGCTAGT
    ACTGAAACTGCTAGAGTAACAGGGAATAACTTAGAAAAACTTATTACTAAAGGTAAAGAA
    ATTGATAAAGAGATGACATATCTTTCAGATATGGATTGGTCTTCTGCAACTCATGGTGAT
    ATAGATAAAACAAAAACAGTACAAAAAGATGCTCCATTTACAACAGGAAATAAAGGAGAG
    CATACTAAGATTTCATTGCTCACTTCTGATGATAAAGTTAAATATTTTGATAAAGGAATA
    GGAACAGTCGCAGATTCTCCATCAGTAATCAGCTATGATATTAGCGGTCAAGGGTTTGAA
    AAATTTGAAACTTATATAGGAATTGATCAAAGTGCTAATAGTTCTAGATCAGACCATGCA
    GTAGTGGATAGAATAGAAATAGAAATTGATGGAAAGGTTGTCTATTCTAGTAGTGTAACT
    AATCCAGAAGGATTCAGATATAATACCCAGGCACAATTTATTAGTGTGACAATTCCACAA
    AACGCTAAAAAAATATCCTTAAAATCATTCGCAGGAGAACATACATGGGGTGATGAAGTT
    GTATTTGCTGATGCTAAACTTATTAAAACTGTTAGTACTCAAACTATAACTCCAGATCTT
    CTTAATAAAGGAATTAATGGAGGAGTATATCTTTCTGATTTAGAATGGGTTGATGCTACT
    CATGGTGATGACGATAAATCAAAAACAGTTCAGAAAGATAAACCGTTTACACCTGGTAAT
    AACGGGTCTAATAATAAAATAAAATTACTAATTGACGGTAAGGAAGTCGAATTTAATAAG
    GGATTGGGAACTGTAGCAAGTAACCCGTCTAGTATAAAATATGATGTTTCGGGTGCTAAT
    GTTACAAGATTTATTTCCTATGTCGGAATTGATAGGAGTGCAAATCATTTAAATTCAGAT
    TACGCAGATATTCAAAAATTTGAAGTTGTTGCGGATGGTAAAGTCATTTACTCATCAGAT
    TCAAAATATCCAAAAGGAATTAAGTATGATACATCGGCATTTCTGGTTGATGTTGAAATT
    CCCAAAGATACACAGACAATAGAACTTAAATCATATTCAGGGAAACATACATGGGCTGAC
    GAATTGGTTTTAGGTGGAGCCTTGTTTATGGCAAATGGTAAATTTAAGAATCCTAATGAT
    TGGTCAGAAGTTGATAAACGTCGTGAAATTAATAATGAACATCCGTTACTTATGATGCCT
    TTATATGCTAACGGAGAAGAGTTTAACCAAGGGAAATATACTTTTTGGGGAGGAGATACA
    TTAACAGGTAAGTGGGAGAATATACCAGATGACTTAAAACCATATACTGTTATACAGTTA
    CATCCAGATGATCTTCCTAAAAGAGATGGAGCTGCTAGAGATTTTTATGAACATATGTTA
    GAAGAAGCAGCGAAATATGTAAATCCTAAGACTGGAAAAAATGAACCAATTCCAGTTATT
    CTGACGGTTTACACTGCTGGTAATATGCCTTATTATACTTCGGCACATTGGTTAAGTACC
    AGCTGGATTGATAAAATGTATCAAAAATATCCAAATTTGCATGGTATTTTCAGTACAGAG
    AATTATTGGATTTGGGCAAATGATATTGAAAATAAGGCGGCAGATTACTTAAAAGTATCA
    GCTAAAAATGGAGGATATTTTATATGGGCTGAACAAAATAATGGTTCTGCAATAGAAAAA
    GCATTTGGAAAAAACGGTAAGATAGCATTTCAGAAATCTGTTGATAAGTACTGGAAGAAC
    CTTATTTTCATGTTCAAAAATACACCTGCTGCTGAGGGAAATGATTCAACTACAGAAAGT
    TATATGAAGGGACTTTGGCTTTCAAATCATACTTATCAATGGGGTGGTTTGATGGATACT
    TGGAAGTGGTATGAGACAGGTAAATGGAAACTGTTTGCAAGTGGTAATATCGGAAAAAGT
    CAAGGAGATAGACAATGGTTGACTGAACCAGAGTCTATGCTAGGAGAAGAAGCTTTAGGG
    ATTTACCTTAATGGAGGTGTAGTTTATAATTTTGAACACCCAGCTTATACCTATGGTGTA
    AATAATAAAGAAAGCTTACTCTTTAGTGAAGTAATAAAAGAATTTTTTAGATATGTAATA
    GCGCATCCAGCACCATCCAAAGAAAAGGTACTTGAGGATACAAAAGTATTCATACATGGA
    GACTATTCAAATAAAGGAAATGGTAAGTTCTTTGTAAACGTAAATACTGATAGAGAACAA
    ACTCCATTATACATGACTGGTCGTTATAATGTTATTCCAGCTATTCCAGGTGTTTTAAAA
    ACAGATAAATTGAAAGAGTCTGTTTCGGGTAGCCATATTCAGATTAAGGAAATCACTTCT
    CCAGAATTTAGCTCTACTCAGGCTAGAAAAGAATACTTAAATAAGCTGTATCCTATGAAT
    TATGAAGGAGATATCTTTGCTCAGAAATTAGATAATAGATGGTTTGTCTATAATTACAAG
    GTAAATGAGAATGTTAAACAGACTGGGAAATTAAAATTTAATTCTTTAGAAATGGATGTT
    GAATTTGAACCTCATACCTACGGTATTTTTGAGAGAATAAGTAATGGATTGAAAGTGAAT
    TTAAATAATTTTAGAACAAATAAAGATTCACTATGGTCTAATGCTCAAGATGCAAATCAG
    GCAAAGAAACTACCACAATTGACCAAGAAAGGTGCCATTAAGTGGATTGAAGAACATTAT
    ATCAAAGATACTCAGTTTGGAGAGAAAAGGGTTACAAAGATAGTATTAAGAGGTATAGAT
    AAACTTCCTACTATTCATTCATTATCAGGAACAAATAATTCCTATGATCAGCCATCTCTC
    AATTTTGATCAGAAAAATCATATGGTTACTATTACCATTAACAGTAACGGAAATCTTGAA
    TTCGAACTTCATTTTTAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1680
    1740
    1800
    1860
    1920
    1980
    2040
    2100
    2160
    2220
    2280
    2340
    2400
    2460
    2520
    2580
    2640
    2700
    2760
    2820
    2880
    2940
    3000
    3018

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPCG_RS11255 [old locus tag: SPCG_2128 ]
  • symbol: SPCG_RS11255
  • description: NPCBM/NEW2 domain-containing protein
  • length: 1005
  • theoretical pI: 6.60275
  • theoretical MW: 113460
  • GRAVY: -0.590348

⊟Function[edit | edit source]

  • TIGRFAM:
    streptococcal pilin isopeptide linkage domain (TIGR03786; HMM-score: 17)
  • TheSEED: see SPCG_2128
  • PFAM:
    no clan defined Glyco_hydro_98M; Glycosyl hydrolase family 98 (PF08306; HMM-score: 285.8)
    Glyco_hydro_98C; Glycosyl hydrolase family 98 C-terminal domain (PF08307; HMM-score: 271.8)
    and 2 more
    GBD (CL0202) NPCBM; NPCBM/NEW2 domain (PF08305; HMM-score: 141)
    GHD (CL0369) SpuA_C; SpuA C-terminal (PF18033; HMM-score: 19.2)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • SignalP: Signal peptide SP(Sec/SPI) length 28 aa
    • SP(Sec/SPI): 0.9921
    • TAT(Tat/SPI): 0.002525
    • LIPO(Sec/SPII): 0.001854
    • Cleavage Site: CS pos: 28-29. VYA-DV. Pr: 0.9452
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MESKKIAKQILIATAVLTSFLGSNLVYADVVQSNSNNRASTETARVTGNNLEKLITKGKEIDKEMTYLSDMDWSSATHGDIDKTKTVQKDAPFTTGNKGEHTKISLLTSDDKVKYFDKGIGTVADSPSVISYDISGQGFEKFETYIGIDQSANSSRSDHAVVDRIEIEIDGKVVYSSSVTNPEGFRYNTQAQFISVTIPQNAKKISLKSFAGEHTWGDEVVFADAKLIKTVSTQTITPDLLNKGINGGVYLSDLEWVDATHGDDDKSKTVQKDKPFTPGNNGSNNKIKLLIDGKEVEFNKGLGTVASNPSSIKYDVSGANVTRFISYVGIDRSANHLNSDYADIQKFEVVADGKVIYSSDSKYPKGIKYDTSAFLVDVEIPKDTQTIELKSYSGKHTWADELVLGGALFMANGKFKNPNDWSEVDKRREINNEHPLLMMPLYANGEEFNQGKYTFWGGDTLTGKWENIPDDLKPYTVIQLHPDDLPKRDGAARDFYEHMLEEAAKYVNPKTGKNEPIPVILTVYTAGNMPYYTSAHWLSTSWIDKMYQKYPNLHGIFSTENYWIWANDIENKAADYLKVSAKNGGYFIWAEQNNGSAIEKAFGKNGKIAFQKSVDKYWKNLIFMFKNTPAAEGNDSTTESYMKGLWLSNHTYQWGGLMDTWKWYETGKWKLFASGNIGKSQGDRQWLTEPESMLGEEALGIYLNGGVVYNFEHPAYTYGVNNKESLLFSEVIKEFFRYVIAHPAPSKEKVLEDTKVFIHGDYSNKGNGKFFVNVNTDREQTPLYMTGRYNVIPAIPGVLKTDKLKESVSGSHIQIKEITSPEFSSTQARKEYLNKLYPMNYEGDIFAQKLDNRWFVYNYKVNENVKQTGKLKFNSLEMDVEFEPHTYGIFERISNGLKVNLNNFRTNKDSLWSNAQDANQAKKLPQLTKKGAIKWIEEHYIKDTQFGEKRVTKIVLRGIDKLPTIHSLSGTNNSYDQPSLNFDQKNHMVTITINSNGNLEFELHF

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

⊟Expression data[edit | edit source]

  • PneumoExpress for strain D39V:

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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