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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 02-MAY-2018
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae D39
- locus tag: SPD_0282 [new locus tag: SPD_RS01540 ]
- pan locus tag?: PNEUPAN001097000
- symbol: SPD_0282
- pan gene symbol?: —
- synonym:
- product: membrane protein, putative
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SPD_0282 [new locus tag: SPD_RS01540 ]
- symbol: SPD_0282
- product: membrane protein, putative
- replicon: chromosome
- strand: +
- coordinates: 279160..279666
- length: 507
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: CP000410 (279160..279666) NCBI
- BioCyc: see SPD_RS01540
- MicrobesOnline: 2017229 MicrobesOnline
- PneumoBrowse for strain D39V: SPV_0282 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
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481ATGGATAGAAAAGAACGACAAAAAATTGAACAACAACGTCGAGAGATGGCTCTAACTAAT
ACTTTTTTCAATCGATATCTTCTTCTACGTTATTCAATAGCACTCTTCTTTTTTGGGAAT
ATTTATTGGCTTTTGAATCAGTTTATTAGTCCCTCGCTTATTATTATTTTCCCCATTATG
CTCATAGTATTTTCTATTTTAGCAACTGTTGAACAATTTAAACTTTATGGAAATAGGAAA
GAAAAGTTGGGAATAACACTAATGTTTGTTAGAATACAAATGCTTATTTCAATAGGATTA
CTTGTTTTAACTTGGACAAGTTGGTTTACGAATCTTTTTCCGATTTTTGAAAATAACCAA
GTAGCACGTTTATTTGTTTTTGTAGTTCTTCTATTAGGTTTAGTTCTGAGTTTGTTAGAC
ATTAGAAGAATTAAAAAAATTTATAAACGAACAGATAAGGCTTATCAACAATTTGTCCAA
TTGGAAAAGAACTCACTTCGTTTATAA60
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507
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SPD_0282 [new locus tag: SPD_RS01540 ]
- symbol: SPD_0282
- description: membrane protein, putative
- length: 168
- theoretical pI: 11.0188
- theoretical MW: 20183.1
- GRAVY: 0.405952
⊟Function[edit | edit source]
- TIGRFAM: Protein fate Protein modification and repair apolipoprotein N-acyltransferase (TIGR00546; EC 2.3.1.-; HMM-score: 10)
- TheSEED :
- FIG01114705: hypothetical protein
- PFAM: no clan defined T_cell_tran_alt; T-cell leukemia translocation-altered (PF15128; HMM-score: 15.2)DUF202; Domain of unknown function (DUF202) (PF02656; HMM-score: 12.7)and 3 moreDUF4006; Family of unknown function (DUF4006) (PF13179; HMM-score: 11.3)DUF2304; Uncharacterized conserved protein (DUF2304) (PF10066; HMM-score: 11.2)DUF2085; Predicted membrane protein (DUF2085) (PF09858; HMM-score: 10)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 4
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.002703
- TAT(Tat/SPI): 0.000254
- LIPO(Sec/SPII): 0.01105
- predicted transmembrane helices (TMHMM): 4
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MDRKERQKIEQQRREMALTNTFFNRYLLLRYSIALFFFGNIYWLLNQFISPSLIIIFPIMLIVFSILATVEQFKLYGNRKEKLGITLMFVRIQMLISIGLLVLTWTSWFTNLFPIFENNQVARLFVFVVLLLGLVLSLLDIRRIKKIYKRTDKAYQQFVQLEKNSLRL
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulators: CelR* (repression) regulon, CcpA regulon
CelR* (TF) important in Cellobiose utilization; RegPrecise transcription unit transferred from TIGR4 data RegPrecise CcpA (TF) important in Global catabolite repression; RegPrecise transcription unit transferred from TIGR4 data RegPrecise
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_0282 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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