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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 02-MAY-2018

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae D39
  • locus tag: SPD_0321 [new locus tag: SPD_RS01745 ]
  • pan locus tag?: PNEUPAN001163000
  • symbol: cps2F
  • pan gene symbol?: cps2F
  • synonym:
  • product: glycosyl transferase, group 2 family protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPD_0321 [new locus tag: SPD_RS01745 ]
  • symbol: cps2F
  • product: glycosyl transferase, group 2 family protein
  • replicon: chromosome
  • strand: +
  • coordinates: 319905..320849
  • length: 945
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    GTGAGTAACAAGCAAATTGCGATTATGATGGCAACTTATAATGGAGCTAAATACATTGGA
    GAACAGATAGACTCTATTCTTAGGCAAACTTATCAAGATTGGAAATTATTTATCCATGAC
    GATTGTTCAAATGATGCTACTTTTCAAATCCTTCAGCAATACCAAGAAAAATACCCTAAA
    AAAATTAAGGTTATCACAGATTCCTCTGTTATAGGGGGGAGCTCAGAGAAAAATTTTGCA
    GCTATTCAAAAATGGGTGACGAATAATCATGATTTTTCTTATTTTATGTTTGCAGATCAA
    GATGATTTTTGGTTTCCAAATAAGATTGAGCGCTCACTTTATAAAATGAAAGAATCAGAA
    AAGGATGATTTACCTATTTTAGTTCATACTGATTTAGAAGTTGTTGATGATAATTTAAAT
    ATAATTAACGATTCTTTCTTCGAATATCGTGCCTTAGATGTAGATGTGACAGAATTGAAT
    CGTATACTTATACAAAATAACATTACGGGTTGTACAATGTTATGGAATAGAAGTTTAAAC
    AATCTGTTAGATTTGAATAGTAATGCAGTAGCTATGCATGATTGGTGGATAAGTTTAGTT
    GCTGCTAGCTTTGGGAAAATTGTTTGCCTTAAAGAACCAACAATTAAATATCGTCAACAC
    GGTGGGAATGTTGTGGGGGCGACACAAGTCAATACTTTAGGTTTTATTATCAAGAGGTTG
    TTAGGAAATTCTCATGTCAAGGAAACTTTGAAGCTATCATTTGAACAAGCAGAATCATTT
    TTAAAAGTTTATCAGAATTCTCTAAGTAATGAGGAGACAGATATTATTCGTGAATTTATC
    AGCATTCCACATAAGCATAAATTGGCGAGAATAAGCACTGTTATAAAAGGAGGCTATCTA
    AAGCAAAGTGTGGTGCAAGTAATCGGTGAGTTAATGTTTATTTAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    945

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPD_0321 [new locus tag: SPD_RS01745 ]
  • symbol: Cps2F
  • description: glycosyl transferase, group 2 family protein
  • length: 314
  • theoretical pI: 6.31448
  • theoretical MW: 36166.1
  • GRAVY: -0.224522

⊟Function[edit | edit source]

  • reaction:
    EC 2.4.1.-?  ExPASy
  • TIGRFAM:
    colanic acid biosynthesis glycosyltransferase WcaA (TIGR04017; EC 2.4.-.-; HMM-score: 42.5)
    hopene-associated glycosyltransferase HpnB (TIGR03469; HMM-score: 36)
    and 5 more
    poly-beta-1,6 N-acetyl-D-glucosamine synthase (TIGR03937; EC 2.4.1.-; HMM-score: 30.2)
    glycosyltransferase domain (TIGR04440; EC 2.-.-.-; HMM-score: 21.3)
    putative glycosyltransferase, exosortase G-associated (TIGR03111; HMM-score: 17.5)
    Unknown function Enzymes of unknown specificity transferase 2, rSAM/selenodomain-associated (TIGR04283; EC 2.-.-.-; HMM-score: 15.6)
    hopanoid biosynthesis associated glycosyl transferase protein HpnI (TIGR03472; HMM-score: 13.2)
  • TheSEED  :
    • Alpha-L-Rha alpha-1,3-L-rhamnosyltransferase (EC 2.4.1.-)
    Cell Wall and Capsule Capsular and extracellular polysacchrides Rhamnose containing glycans  Alpha-L-Rha alpha-1,3-L-rhamnosyltransferase (EC 2.4.1.-)
  • PFAM:
    GT-A (CL0110) Glycos_transf_2; Glycosyl transferase family 2 (PF00535; HMM-score: 63.2)
    and 2 more
    Glyco_tranf_2_3; Glycosyltransferase like family 2 (PF13641; HMM-score: 38.2)
    Glyco_tranf_2_4; Glycosyl transferase family 2 (PF13704; HMM-score: 20.7)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.1267
    • Cytoplasmic Membrane Score: 0.8051
    • Cell wall & surface Score: 0.0013
    • Extracellular Score: 0.0669
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.015886
    • TAT(Tat/SPI): 0.000249
    • LIPO(Sec/SPII): 0.002706
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MSNKQIAIMMATYNGAKYIGEQIDSILRQTYQDWKLFIHDDCSNDATFQILQQYQEKYPKKIKVITDSSVIGGSSEKNFAAIQKWVTNNHDFSYFMFADQDDFWFPNKIERSLYKMKESEKDDLPILVHTDLEVVDDNLNIINDSFFEYRALDVDVTELNRILIQNNITGCTMLWNRSLNNLLDLNSNAVAMHDWWISLVAASFGKIVCLKEPTIKYRQHGGNVVGATQVNTLGFIIKRLLGNSHVKETLKLSFEQAESFLKVYQNSLSNEETDIIREFISIPHKHKLARISTVIKGGYLKQSVVQVIGELMFI

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription[edit | edit source]

  • transcription start site:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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