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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 02-MAY-2018
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae D39
- locus tag: SPD_1715 [new locus tag: SPD_RS09130 ]
- pan locus tag?: PNEUPAN003499000
- symbol: SPD_1715
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SPD_1715 [new locus tag: SPD_RS09130 ]
- symbol: SPD_1715
- product: hypothetical protein
- replicon: chromosome
- strand: -
- coordinates: 1714236..1714535
- length: 300
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: CP000410 (1714236..1714535) NCBI
- BioCyc: see SPD_RS09130
- MicrobesOnline: 2018570 MicrobesOnline
- PneumoBrowse for strain D39V: SPV_1715 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181
241ATGAATGGTATGAAAGCTAAAAAAATGTGGATGGCAGGCTTGGCTCTGCTAGGTATCGGA
AGCCTTGCTCTTGCCACGAAAAAAGTTGCAGATGACCGTAAGCTCATGAAGACTCAGGAA
GAGTTGACAGAGATTGTGCGAGACCATTTTTCCGACATGGGGGAAATTGCGACCCTCTAT
GTTCAAGTTTACGAAAGCAGTCTGGAGAGCTTGGTTGGTGGCGTCATTTTTGAGGATGGT
CGTCATTATACCTTTGTCTATGAAAATGAAGACCTAGTCTATGAGGAGGAAGTCTTATGA60
120
180
240
300
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SPD_1715 [new locus tag: SPD_RS09130 ]
- symbol: SPD_1715
- description: hypothetical protein
- length: 99
- theoretical pI: 4.3529
- theoretical MW: 11210.8
- GRAVY: -0.0858586
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED :
- FIG014356: hypothetical protein
- PFAM: no clan defined DUF4651; Domain of unknown function (DUF4651) (PF15513; HMM-score: 101.3)and 2 moreRRM (CL0221) Nup35_RRM_2; Nup53/35/40-type RNA recognition motif (PF14605; HMM-score: 16.5)no clan defined Maf_C; Flagellin glycosyltransferase Maf helical bundle domain (PF20156; HMM-score: 13.6)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 2.5
- Cytoplasmic Membrane Score: 2.5
- Cellwall Score: 2.5
- Extracellular Score: 2.5
- Internal Helix: 1
- SignalP: Signal peptide SP(Sec/SPI) length 30 aa
- SP(Sec/SPI): 0.786469
- TAT(Tat/SPI): 0.010853
- LIPO(Sec/SPII): 0.063975
- Cleavage Site: CS pos: 30-31. KVA-DD. Pr: 0.2610
- predicted transmembrane helices (TMHMM): 1
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MNGMKAKKMWMAGLALLGIGSLALATKKVADDRKLMKTQEELTEIVRDHFSDMGEIATLYVQVYESSLESLVGGVIFEDGRHYTFVYENEDLVYEEEVL
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_1715 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.