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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 02-MAY-2018
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae D39
- locus tag: SPD_2030 [new locus tag: SPD_RS10740 ]
- pan locus tag?: PNEUPAN003915000
- symbol: dnaB
- pan gene symbol?: dnaC
- synonym:
- product: replicative DNA helicase
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SPD_2030 [new locus tag: SPD_RS10740 ]
- symbol: dnaB
- product: replicative DNA helicase
- replicon: chromosome
- strand: -
- coordinates: 2008216..2009568
- length: 1353
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Location: CP000410 (2008216..2009568) NCBI
- BioCyc: see SPD_RS10740
- MicrobesOnline: 2018844 MicrobesOnline
- PneumoBrowse for strain D39V: SPV_2030 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
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1321ATGGCAGAAGTAGAAGAGTTACGAGTACAACCTCAAGATATCTTAGCTGAGCAATCCGTT
TTAGGGGCTATCTTTATTGATGAGAGTAAACTTGTTTTTGTGCGAGAATACATTGAGTCT
CGGGACTTTTTTAAGTATGCCCATCGTTTGATTTTCCAAGCCATGGTCGATTTATCCGAT
CGTGGTGATGCCATAGATGCAACAACGGTTCGTACTATCCTTGATAATCAAGGTGATTTA
CAGAATATTGGTGGCTTGTCTTACTTGGTTGAGATTGTTAATTCTGTGCCAACTTCTGCT
AATGCGGAGTATTATGCTAAGATTGTTGCAGAAAAAGCAATGCTACGTCGTTTAATTGCC
AAGTTGACAGAGTCTGTCAACCAAGCTTACGAAGCGTCACAACCAGCTGATGAAATTATT
GCTCAGGCAGAAAAAGGGTTGATTGATGTCAGTGAAAATGCAAATCGAAGCGGGTTTAAG
AACATTCGAGATGTGTTGAATCTCAACTTTGGAAATCTGGAAGCTCGCTCGCAACAAACG
ACCGATATTACAGGTATTGCGACAGGTTATCGTGATTTGGATCATATGACAACAGGACTT
CATGAGGAGGAGTTGATTATCTTAGCAGCTCGTCCAGCAGTTGGTAAGACAGCATTTGCC
TTGAATATCGCTCAGAATATTGGGACTAAGTTGGACAAAACGGTTGCTATTTTTTCACTC
GAAATGGGTGCGGAAAGCTTGGTAGACCGTATGTTAGCTGCAGAAGGCTTGGTGGAGTCA
CATTCTATCCGTACAGGGCAATTGACAGATGAGGAGTGGCAAAAATATACTATTGCTCAG
GGTAATCTAGCTAACGCCAGTATCTATATCGATGATACGCCAGGTATTCGGATTACAGAG
ATTCGTTCTCGTTCTCGTAAATTGGCTCAAGAAACTGGAAATCTTGGTTTGATTTTGATA
GACTATTTGCAACTTATCACGGGAACTGGTCGAGAAAATCGTCAACAAGAAGTTTCTGAA
ATTTCTCGTCAGTTGAAAATACTAGCCAAGGAATTGAAGGTTCCAGTAATCGCTCTGAGT
CAGCTTTCTCGTGGTGTAGAACAACGTCAGGACAAGAGACCGGTCTTGTCTGATATTCGT
GAATCTGGGTCTATTGAGCAGGACGCTGATATCGTAGCTTTTCTCTATCGCGATGACTAC
TATGAACGTGGTGGTGAAGAAGAGGAGGGTATCCCAAATAATAAGGTGGAAGTTATTATC
GAGAAAAACCGTAGTGGAGCTCGTGGAACAGTGGAATTGATTTTCCAAAAAGAATACAAT
AAATTTTCAAGTATCTCAAAGAGGGAGGCATAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SPD_2030 [new locus tag: SPD_RS10740 ]
- symbol: DnaB
- description: replicative DNA helicase
- length: 450
- theoretical pI: 4.60373
- theoretical MW: 50203.3
- GRAVY: -0.307111
⊟Function[edit | edit source]
- reaction: EC 3.6.1.-? ExPASy
- TIGRFAM: DNA metabolism DNA replication, recombination, and repair replicative DNA helicase (TIGR00665; EC 3.6.4.12; HMM-score: 553.9)and 1 moreMobile and extrachromosomal element functions Prophage functions phage replicative helicase, DnaB family (TIGR03600; HMM-score: 431.4)
- TheSEED :
- Replicative DNA helicase DnaB (=BsDnaC) (EC 3.6.4.12)
and 1 more - PFAM: P-loop_NTPase (CL0023) DnaB_C; DnaB-like helicase C terminal domain (PF03796; HMM-score: 364.7)and 4 moreno clan defined DnaB; DnaB-like helicase N terminal domain (PF00772; HMM-score: 108.6)P-loop_NTPase (CL0023) AAA_25; AAA domain (PF13481; HMM-score: 45.3)AAA; ATPase family associated with various cellular activities (AAA) (PF00004; HMM-score: 17.7)ATPase; KaiC (PF06745; HMM-score: 15.1)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 1.78
- Cytoplasmic Membrane Score: 8.16
- Cellwall Score: 0.06
- Extracellular Score: 0.01
- Internal Helices: 0
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.000746
- TAT(Tat/SPI): 0.000305
- LIPO(Sec/SPII): 0.000108
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MAEVEELRVQPQDILAEQSVLGAIFIDESKLVFVREYIESRDFFKYAHRLIFQAMVDLSDRGDAIDATTVRTILDNQGDLQNIGGLSYLVEIVNSVPTSANAEYYAKIVAEKAMLRRLIAKLTESVNQAYEASQPADEIIAQAEKGLIDVSENANRSGFKNIRDVLNLNFGNLEARSQQTTDITGIATGYRDLDHMTTGLHEEELIILAARPAVGKTAFALNIAQNIGTKLDKTVAIFSLEMGAESLVDRMLAAEGLVESHSIRTGQLTDEEWQKYTIAQGNLANASIYIDDTPGIRITEIRSRSRKLAQETGNLGLILIDYLQLITGTGRENRQQEVSEISRQLKILAKELKVPVIALSQLSRGVEQRQDKRPVLSDIRESGSIEQDADIVAFLYRDDYYERGGEEEEGIPNNKVEVIIEKNRSGARGTVELIFQKEYNKFSSISKREA
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_2030 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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