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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 02-MAY-2018
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae D39
- locus tag: SPD_2031 [new locus tag: SPD_RS10745 ]
- pan locus tag?: PNEUPAN003914000
- symbol: rplI
- pan gene symbol?: rplI
- synonym:
- product: ribosomal protein L9
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SPD_2031 [new locus tag: SPD_RS10745 ]
- symbol: rplI
- product: ribosomal protein L9
- replicon: chromosome
- strand: -
- coordinates: 2009612..2010064
- length: 453
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: CP000410 (2009612..2010064) NCBI
- BioCyc: see SPD_RS10745
- MicrobesOnline: 2018845 MicrobesOnline
- PneumoBrowse for strain D39V: SPV_2031 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181
241
301
361
421ATGAAAGTAATCTTTTTAGCAGATGTTAAAGGAAAAGGTAAAAAAGGCGAAATTAAGGAA
GTACCAACAGGGTATGCGCAAAACTTTCTTATCAAAAAGAATCTAGCCAAAGAAGCGACT
GCTCAAGCTGTAGGTGAACTTCGTGGTAAACAAAAATCGGAAGAAAAAGCTCACGCTGAG
ATGATTGCAGAAGGAAAAGCAATTAAAGCACAACTTGAAGCAGAAGAAACTGTTGTAGAA
TTTGTTGAAAAAGTTGGTCCAGATGGTCGTACCTTTGGTTCTATTACCAATAAGAAGATT
GCAGAAGAATTGCAAAAGCAATTTGGAATTAAGATTGATAAACGTCATATTCAAGTACAA
GCTCCGATTCGAGCGGTTGGTTTGATTGATGTGCCAGTGAAAATCTATCAAGATATCACA
AGTGTAATCAATCTTCGTGTGAAAGAAGGATAA60
120
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453
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SPD_2031 [new locus tag: SPD_RS10745 ]
- symbol: RplI
- description: ribosomal protein L9
- length: 150
- theoretical pI: 10.1413
- theoretical MW: 16523.1
- GRAVY: -0.353333
⊟Function[edit | edit source]
- TIGRFAM: Protein synthesis Ribosomal proteins: synthesis and modification ribosomal protein bL9 (TIGR00158; HMM-score: 123)
- TheSEED :
- LSU ribosomal protein L9p
- PFAM: no clan defined Ribosomal_L9_C; Ribosomal protein L9, C-terminal domain (PF03948; HMM-score: 85.9)Ribosomal_L9_N; Ribosomal protein L9, N-terminal domain (PF01281; HMM-score: 69)and 2 moreArgoL2; Argonaute linker 2 domain (PF16488; HMM-score: 14.1)DUF6335; Family of unknown function (DUF6335) (PF19861; HMM-score: 14.1)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 9.67
- Cytoplasmic Membrane Score: 0.01
- Cellwall Score: 0.15
- Extracellular Score: 0.17
- Internal Helices: 0
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.009457
- TAT(Tat/SPI): 0.000572
- LIPO(Sec/SPII): 0.002844
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MKVIFLADVKGKGKKGEIKEVPTGYAQNFLIKKNLAKEATAQAVGELRGKQKSEEKAHAEMIAEGKAIKAQLEAEETVVEFVEKVGPDGRTFGSITNKKIAEELQKQFGIKIDKRHIQVQAPIRAVGLIDVPVKIYQDITSVINLRVKEG
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_2031 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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