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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 30-JAN-2014
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae G54
- locus tag: SPG_0750 [new locus tag: SPG_RS03790 ]
- pan locus tag?: PNEUPAN001797000
- symbol: SPG_0750
- pan gene symbol?: deoB
- synonym:
- product: phosphopentomutase
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SPG_0750 [new locus tag: SPG_RS03790 ]
- symbol: SPG_0750
- product: phosphopentomutase
- replicon: chromosome
- strand: +
- coordinates: 729878..731089
- length: 1212
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: CP001015 (729878..731089) NCBI
- BioCyc: see SPG_RS03790
- MicrobesOnline: 5756019 MicrobesOnline
- PneumoBrowse for strain D39V: SPV_0724 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
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1201ATGTCTAAATTTAATCGTATTCATTTGGTGGTACTGGATTCTGTAGGAATCGGTGCAGCA
CCAGATGCTAATAACTTTGTCAATGCAGGGGTTCCAGATGGAGCTTCTGACACACTGGGA
CACATTTCAAAAACAGTTGGTTTGAATGTCCCAAACATGGCTAAAATAGGTCTTGGAAAT
ATTCCTCGTGAAACTCCTCTTAAGACTGTAGCAGCTGAAATCAATCCAACTGGATATGCA
ACAAAATTAGAGGAAGTATCTCTTGGTAAGGATACTATGACTGGACACTGGGAAATCATG
GGACTCAACATTACTGAGCCTTTCGATACTTTCTGGAACGGATTCCCAGAAGAAATCCTG
ACAAAAATTGAAGAATTCTCAGGACGCAAGGTTATTCGTGAAGCCAACAAACCTTATTCA
GGAACGGCTGTTATCGATGATTTTGGACCACGTCAGATGGAAACTGGAGAGTTGATTATC
TATACTTCAGCTGACCCTGTTTTGCAGATTGCTGCCCACGAAGACATTATTCCTTTGGAT
GAATTGTACCGTATCTGTGAATACGCTCGTTCGATTACCCTTGAGCGTCCTGCCCTTCTT
GGTCGCATCATTGCTCGCCCTTATGTAGGTGAACCAGGTAACTTCACTCGTACGGCAAAC
CGTCGTGACTTGGCTGTATCTCCATTTTCCCCAACTGTTTTGGATAAATTGAATGAGGCT
GATATCGATACTTATGCTGTGGGTAAAATCAACGATATCTTTAACGGTGCTGGTATCAAC
CATGACATGGGTCACAACAAGTCAAATAGTCATGGAATTGATACACTATTGAAGACTATG
GGACTTGCTGAGTTTGAAAAAGGATTCTCATTCACAAACCTAGTTGACTTTGATGCCCTT
TACGGCCATCGTCGTAATGCTCACGGTTACCGTGATTGCTTGCATGAGTTTGATGAACGC
TTACCTGAAATTATCGCAGCTATGAGAGAGAATGACCTTCTCTTGATTACTGCGGACCAT
GGAAATGACCCAACGTATGCAGGAACGGATCACACTCGGGAATATATTCCATTGTTGGCC
TATAGCCCTGCCTTTAAAGGAAATGGTCTCATTCCAGTAGGACATTTTGCAGATATTTCA
GCGACTGTTGCCGATAACTTTGGTGTGGAAACTGCTATGATTGGGGAAAGTTTCTTAGAT
AAATTGGTATAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SPG_0750 [new locus tag: SPG_RS03790 ]
- symbol: SPG_0750
- description: phosphopentomutase
- length: 403
- theoretical pI: 4.72474
- theoretical MW: 44160.5
- GRAVY: -0.187841
⊟Function[edit | edit source]
- reaction: EC 5.4.2.7? ExPASyPhosphopentomutase Alpha-D-ribose 1-phosphate = D-ribose 5-phosphate
- TIGRFAM: Purines, pyrimidines, nucleosides, and nucleotides Other phosphopentomutase (TIGR01696; EC 5.4.2.7; HMM-score: 512.4)and 2 moreEnergy metabolism Glycolysis/gluconeogenesis phosphoglycerate mutase (2,3-diphosphoglycerate-independent) (TIGR01307; EC 5.4.2.12; HMM-score: 19.6)Energy metabolism Glycolysis/gluconeogenesis phosphoglycerate mutase (2,3-diphosphoglycerate-independent), archaeal form (TIGR00306; EC 5.4.2.12; HMM-score: 14.7)
- TheSEED :
- Phosphopentomutase (EC 5.4.2.7)
- PFAM: Alk_phosphatase (CL0088) Metalloenzyme; Metalloenzyme superfamily (PF01676; HMM-score: 115.8)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 9.97
- Cytoplasmic Membrane Score: 0
- Cellwall Score: 0.01
- Extracellular Score: 0.02
- Internal Helices: 0
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.175878
- TAT(Tat/SPI): 0.017627
- LIPO(Sec/SPII): 0.014851
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MSKFNRIHLVVLDSVGIGAAPDANNFVNAGVPDGASDTLGHISKTVGLNVPNMAKIGLGNIPRETPLKTVAAEINPTGYATKLEEVSLGKDTMTGHWEIMGLNITEPFDTFWNGFPEEILTKIEEFSGRKVIREANKPYSGTAVIDDFGPRQMETGELIIYTSADPVLQIAAHEDIIPLDELYRICEYARSITLERPALLGRIIARPYVGEPGNFTRTANRRDLAVSPFSPTVLDKLNEADIDTYAVGKINDIFNGAGINHDMGHNKSNSHGIDTLLKTMGLAEFEKGFSFTNLVDFDALYGHRRNAHGYRDCLHEFDERLPEIIAAMRENDLLLITADHGNDPTYAGTDHTREYIPLLAYSPAFKGNGLIPVGHFADISATVADNFGVETAMIGESFLDKLV
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- MicrobesOnline: ripA > SPG_0750 > SPG_0751 > pnp
⊟Regulation[edit | edit source]
- regulator: CcpA* regulon
CcpA* (TF) important in Global catabolite repression; RegPrecise
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_0724 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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