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serotype 4
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serotype 6B
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INV200
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SPN032672
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SPN034183
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SPN994038
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SPN994039
serotype 3
SPNA45
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TCH8431/19A
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serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 30-JAN-2014

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae G54
  • locus tag: SPG_1548 [new locus tag: SPG_RS07715 ]
  • pan locus tag?: PNEUPAN003046000
  • symbol: SPG_1548
  • pan gene symbol?: —
  • synonym:
  • product: conserved hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPG_1548 [new locus tag: SPG_RS07715 ]
  • symbol: SPG_1548
  • product: conserved hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1488083..1488925
  • length: 843
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    ATGACGAAAATAGCTCTTCTTTCAGATATTCATGGAAATACCACCGCCTTGGAGGCTGTT
    TTGGCAGATGCTCGGCAGCTAGGAGTGGATGAATACTGGCTTTTGGGAGATATTCTCATG
    CCAGGGACAGGGCGTAGAAGGATTTTGGACTTGTTGGATCAACTACCGATTACGGCTAGA
    GTTTTGGGAAACTGGGAAGACAGTCTTTGGCATGGTGTCCGTAAGGAATTGGATAGTACT
    CGCCCCAGTCAACGCTATCTCTTGCGCCAGTGCCAGTATGTTTTAGAGGAAATTTCCCTA
    GAAGAAATTGAAGTGCTCCACAATCAACCTCTTCAAATTCATCGTCAGTTTGGGGATTTG
    ACGGTGGGAATTAGCCATCATCTGCCTGATAAGAACTGGGGGCGAGAGTTGATTCATACT
    GGCAAACAAGAGGAGTTTGACCGCTTGGTGACTCATCCTCCCTGTGATATTGCTGTTTAT
    GGACATATTCACCAGCAGTTGCTTCGTTACGGGACTGGTGGGCAATTGATTGTCAATCCG
    GGTTCGATTGGCCAACCTTTCTTTTTGGACGCTCAGCTACGGAAGGACTTGCGGGCCCAG
    TATATGATTTTGGAGTTTGATGACAAAGGCCTGGTAGATATGGACTTCCGACGGGTAGAC
    TACGATGTGGCAGCGGAATTGCAGCTGGCTAAAGACCTGAGACTTCCCTATTTTGAGGTT
    TACTATGAAAGTCTGGTCAATGGGATCCACCATACTCATCATCAGGAATTTTTGAGAGAA
    TTGGCTCAGAAAGAGGGCTGCGATCGGGAGTTAGACGACTGGTTGAAAAGTGGTAACGAT
    TGA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    843

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPG_1548 [new locus tag: SPG_RS07715 ]
  • symbol: SPG_1548
  • description: conserved hypothetical protein
  • length: 280
  • theoretical pI: 5.20259
  • theoretical MW: 32393.5
  • GRAVY: -0.415

⊟Function[edit | edit source]

  • TIGRFAM:
    Unknown function Enzymes of unknown specificity phosphodiesterase, MJ0936 family (TIGR00040; EC 3.1.-.-; HMM-score: 39.7)
  • TheSEED  :
    • Diadenosine tetraphosphatase and related serine/threonine protein phosphatases
  • PFAM:
    Calcineurin (CL0163) Metallophos_2; Calcineurin-like phosphoesterase superfamily domain (PF12850; HMM-score: 61.6)
    and 3 more
    Metallophos; Calcineurin-like phosphoesterase (PF00149; HMM-score: 34)
    Metallophos_3; Metallophosphoesterase, calcineurin superfamily (PF14582; HMM-score: 11.7)
    Met_repress (CL0057) RHH_9; Ribbon-helix-helix protein (PF19839; HMM-score: 10.6)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9935
    • Cytoplasmic Membrane Score: 0.0006
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.0059
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.002867
    • TAT(Tat/SPI): 0.000186
    • LIPO(Sec/SPII): 0.000439
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: ACF56801 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MTKIALLSDIHGNTTALEAVLADARQLGVDEYWLLGDILMPGTGRRRILDLLDQLPITARVLGNWEDSLWHGVRKELDSTRPSQRYLLRQCQYVLEEISLEEIEVLHNQPLQIHRQFGDLTVGISHHLPDKNWGRELIHTGKQEEFDRLVTHPPCDIAVYGHIHQQLLRYGTGGQLIVNPGSIGQPFFLDAQLRKDLRAQYMILEFDDKGLVDMDFRRVDYDVAAELQLAKDLRLPYFEVYYESLVNGIHHTHHQEFLRELAQKEGCDRELDDWLKSGND

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription[edit | edit source]

  • transcription start site:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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