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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 10-NOV-2021
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae G54
- locus tag: SPG_RS02220 [old locus tag: SPG_0438 ]
- pan locus tag?: PNEUPAN001362000
- symbol: SPG_RS02220
- pan gene symbol?: mtsA
- synonym:
- product: ECF-type riboflavin transporter substrate-binding protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SPG_RS02220 [old locus tag: SPG_0438 ]
- symbol: SPG_RS02220
- product: ECF-type riboflavin transporter substrate-binding protein
- replicon: chromosome
- strand: +
- coordinates: 429579..430127
- length: 549
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: NC_011072 (429579..430127) NCBI
- BioCyc: SPG_RS02220 BioCyc
- MicrobesOnline: see SPG_0438
- PneumoBrowse for strain D39V: SPV_0432 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
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481
541ATGGAAATCAAATTTACAATTAAACAAGTTGTTGCTGTCGGAATTGGCGCTGCCCTCTTT
GTCGTCATCGGGATGATCAACATTCCAACCCCTGTTCCAAATACAAGCATCCAGCTTCAG
TATGCGGTACAAGCGCTACTTTCTATTATTTTTGGACCGATTATCGGTTTGCTTGTCGGG
TTGATTGGTCATGCAATCAAGGACTCTCTTGTTGGTTATGGTCTATGGTGGACTTGGATT
ATCGCTAGCGGACTCTTTGGCTTAGTTGTGGGACTTTTTAGAAAGTACGTTCGCGTGATC
AATAGTGTTTTTGACTGGAAAGATATTCTTATTTTTAATCTCATTCAACTACTTGCAAAT
GCCCTTGTTTGGGGTGTCTTGGCACCACTTGGAGATGTTGTGATTTATCAAGAAGCGGCA
GAAAAAGTATTTGCACAAGGGATTGTTGCGGGAATTGCCAATGGTGTATCTGTAGCTATT
GCAGGAACTCTTCTCTTACTTGCCTATGCAGGAACCCAAACTCGTGCAGGAAGTTTGAAA
AAGGACTAA60
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549
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SPG_RS02220 [old locus tag: SPG_0438 ]
- symbol: SPG_RS02220
- description: ECF-type riboflavin transporter substrate-binding protein
- length: 182
- theoretical pI: 9.71498
- theoretical MW: 19373
- GRAVY: 1.02692
⊟Function[edit | edit source]
- TIGRFAM: Transport and binding proteins Unknown substrate ECF transporter S component, folate family (TIGR04518; HMM-score: 37.8)and 1 moreUnknown function General small integral membrane protein (TIGR04570; HMM-score: 8)
- TheSEED: see SPG_0438
- PFAM: Gx_transp (CL0315) ECF-ribofla_trS; ECF-type riboflavin transporter, S component (PF07155; HMM-score: 185.8)and 4 moreECF_trnsprt; ECF transporter, substrate-specific component (PF12822; HMM-score: 24.3)5TM-5TMR_LYT; 5TMR of 5TMR-LYT (PF07694; HMM-score: 20.3)no clan defined DUF5671; Domain of unknown function (DUF5671) (PF18920; HMM-score: 15.1)Gx_transp (CL0315) CbiM; Cobalt uptake substrate-specific transmembrane region (PF01891; HMM-score: 14.5)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 5
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.053736
- TAT(Tat/SPI): 0.001404
- LIPO(Sec/SPII): 0.065435
- predicted transmembrane helices (TMHMM): 5
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MEIKFTIKQVVAVGIGAALFVVIGMINIPTPVPNTSIQLQYAVQALLSIIFGPIIGLLVGLIGHAIKDSLVGYGLWWTWIIASGLFGLVVGLFRKYVRVINSVFDWKDILIFNLIQLLANALVWGVLAPLGDVVIYQEAAEKVFAQGIVAGIANGVSVAIAGTLLLLAYAGTQTRAGSLKKD
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator: MtaR* see SPG_0438
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_0432 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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