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serotype 1

NCBI: 24-APR-2024

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae G54
  • locus tag: SPG_RS04275 [old locus tag: SPG_0847 ]
  • pan locus tag?: PNEUPAN001902000
  • symbol: aguA
  • pan gene symbol?: aguA
  • synonym:
  • product: agmatine deiminase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPG_RS04275 [old locus tag: SPG_0847 ]
  • symbol: aguA
  • product: agmatine deiminase
  • replicon: chromosome
  • strand: +
  • coordinates: 824853..825992
  • length: 1140
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    ATGATGGACAGTCCAAAAAAATTAGGCTATCACATGCCAGCAGAGTACGAACCCCATCAT
    GGTACCCTCATGATATGGCCGACTCGACCAGGATCATGGCCTTTTCAAGGAAAGGATGCT
    AAAAGAGCATTTACTCAGATCATCGAGACTATAGCAGAAGGGGAAAGAGTCTATCTTTTG
    GTGGAGCAGGCCTATCTATCTGAAGCCCAATCCTATCTTGGAGACAAGGTTGTTTATTTA
    GACATTCCCACCAATGATGCCTGGGCGCGTGATACTGGCCCAACCATTCTCGTCAATGAC
    AAAGGTAAGAAATTAGCCGTGGATTGGGCCTTCAATGCTTGGGGAGGCACCTATGATGGT
    CTTTATCAAGATTATGAAGAGGATGACCAAGTAGCCAGTCGTTTTGCTGAGGCCTTGGAA
    AGGCCTGTCTATGATGCTAAACCTTTTGTACTGGAAGGAGGCGCAATCCATAGCGATGGT
    CAAGGAACTATTCTCGTAACTGAAAGTTGCTTGCTTAGTCCTGGTCGCAATCCTAACTTG
    ACTAAAGAGGAGATTGAAAACACATTATTAGAAAGTCTTGGTGCTGAAAAAGTTATTTGG
    CTTCCTTATGGTATTTATCAGGATGAAACCAATGAACACGTCGATAATGTTGCTGCCTTT
    GTTGGTCCTGCTGAGGTTGTTTTGGCTTGGACAGATGACGAAAATGATCCCCAGTATGCC
    ATGTCAAAAGCAGATCTCGAACTCTTAGAACAGGAAACAGATGCAAAAGGTTGTCACTTC
    ACCATTCATAAATTGCCTATCCCTGCAGTTCGACAAGTTGTGACAGAAGAAGATTTGCCA
    GGCTACATCTATGAAGAAGGAGAAGAAGAGCGATACGCAGGTGAACGACTAGCAGCTTCC
    TACGTAAACTTTTATATCGCCAACAAGGCTGTCTTGGTTCCACAGTTTGAGGATGTAAAC
    GACCAAGTGGCCTTAGATATCCTCAGCAAGTGTTTCCCAGACCGTAAAGTTGTCGGAATA
    CCAGCCAGAGATATTNTTCTTAGGTGGTGGCAATATCCACTGTATCACCCAACAAATTCC
    AGAATAGGAGAAAAAGATGAGAAATGTAAGAGTTGCAACCATTCAGATGCAATGCGCTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPG_RS04275 [old locus tag: SPG_0847 ]
  • symbol: AguA
  • description: agmatine deiminase
  • length: 379
  • theoretical pI: 4.33892
  • theoretical MW: 42729.6
  • GRAVY: -0.470106

⊟Function[edit | edit source]

  • reaction:
    EC 3.5.3.12?  ExPASy
    Agmatine deiminase Agmatine + H2O = N-carbamoylputrescine + NH3
  • TIGRFAM:
    Metabolism Central intermediary metabolism Polyamine biosynthesis agmatine deiminase (TIGR03380; EC 3.5.3.12; HMM-score: 437.1)
  • TheSEED: see SPG_0847
  • PFAM:
    GME (CL0197) PAD_porph; Porphyromonas-type peptidyl-arginine deiminase (PF04371; HMM-score: 362.9)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.6232
    • Cytoplasmic Membrane Score: 0.033
    • Cell wall & surface Score: 0.006
    • Extracellular Score: 0.3378
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.004748
    • TAT(Tat/SPI): 0.000548
    • LIPO(Sec/SPII): 0.000858
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: WP_012512714 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MMDSPKKLGYHMPAEYEPHHGTLMIWPTRPGSWPFQGKDAKRAFTQIIETIAEGERVYLLVEQAYLSEAQSYLGDKVVYLDIPTNDAWARDTGPTILVNDKGKKLAVDWAFNAWGGTYDGLYQDYEEDDQVASRFAEALERPVYDAKPFVLEGGAIHSDGQGTILVTESCLLSPGRNPNLTKEEIENTLLESLGAEKVIWLPYGIYQDETNEHVDNVAAFVGPAEVVLAWTDDENDPQYAMSKADLELLEQETDAKGCHFTIHKLPIPAVRQVVTEEDLPGYIYEEGEEERYAGERLAASYVNFYIANKAVLVPQFEDVNDQVALDILSKCFPDRKVVGIPARDIXLRWWQYPLYHPTNSRIGEKDEKCKSCNHSDAMR

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription[edit | edit source]

  • transcription start site:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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