From PneumoWiki
Jump to navigation Jump to search
PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 10-NOV-2021

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae G54
  • locus tag: SPG_RS05745 [old locus tag: SPG_1140 ]
  • pan locus tag?: PNEUPAN002532000
  • symbol: SPG_RS05745
  • pan gene symbol?: guaC
  • synonym:
  • product: GMP reductase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPG_RS05745 [old locus tag: SPG_1140 ]
  • symbol: SPG_RS05745
  • product: GMP reductase
  • replicon: chromosome
  • strand: -
  • coordinates: 1119781..1120767
  • length: 987
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: NC_011072 (1119781..1120767) NCBI
  • BioCyc: SPG_RS05745 BioCyc
  • MicrobesOnline: see SPG_1140
  • PneumoBrowse for strain D39V: SPV_1107 PneumoBrowse

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    ATGTTAAATGAATTTCCAATTTTTGATTACGAAGATATTCAATTGATTCCAAATAAATGT
    GTCATTAAAAGCCGTGCAGAAGCGGATACAAGTGTCACTTTAGGAAATCACACCTTTAAA
    CTACCTGTTGTGCCAGCGAATATGCAGACGATTTTGGATGAAAATGTAGCAGAGCAACTG
    GCTAAAGGTGGTTACTTCTACATTATGCACCGTTTTGATGAGGCAGGACGCATTCCTTTT
    ATTAAACGCATGCACGATCAAGGGCTCATTGCTTCTATCTCTGTCGGTGTTAAGGATTAT
    GAGTATGATTTTGTTAGCCAGCTCAAGGCTGATGCTCCTGAGTATATCACTATTGATATT
    GCTCATGGTCATGCGGATAGCGTGATTTCTATGATTCAACACATCAAGAAAGAATTGCCA
    GATACCTTTGTCATTGCTGGAAATGTGGGAACACCAGAAGCTGTGCGTGAATTGGAAAAT
    GCTGGTGCGGATGCTACTAAGGTCGGAATTGGTCCTGGTAAGGTTTGTATCACCAAGGTT
    AAGACTGGTTTTGGTACAGGTGGTTGGCAGTTGGCTGCTNTACGCTGGTGTGCCAAGGCT
    GCGCGTAAACCGATTATCGCTGATGGAGGAATTCGTACTCACGGTGATATTGCCAAGTCT
    ATCCGCTTCGGTGCTAGCATGATCATGATTGGTTCCCTCTTTGCAGGACACATTGAAAGT
    CCAGGGAAAACGATTGAAGTCGATGGTGAACAGTTCAAAGAATATTATGGTTCAGCCTCA
    CAATATCAGAAAGGTGCTTACAAAAATGTGGAAGGCAAACGTATCTTGCTTCCTGCTAAA
    GGTCATCTGCAAGACACTTTAACTGAGATGGAACAAGACCTTCAAAGTGCTATTTCTTAT
    GCAGGTGGACGTCAGGTTGCTGACCTTAAACACGTTGATTATGTGATCGTGAAAAACTCC
    ATCTGGAATGGGGATGCTTCCCACTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    987

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPG_RS05745 [old locus tag: SPG_1140 ]
  • symbol: SPG_RS05745
  • description: GMP reductase
  • length: 328
  • theoretical pI: 6.58782
  • theoretical MW: 35769.6
  • GRAVY: -0.190214

⊟Function[edit | edit source]

  • reaction:
    EC 1.7.1.7?  ExPASy
    GMP reductase Inosine 5'-phosphate + NH3 + NADP+ = guanosine 5'-phosphate + NADPH
  • TIGRFAM:
    Metabolism Purines, pyrimidines, nucleosides, and nucleotides Nucleotide and nucleoside interconversions guanosine monophosphate reductase (TIGR01306; EC 1.7.1.7; HMM-score: 641.4)
    and 12 more
    Metabolism Purines, pyrimidines, nucleosides, and nucleotides Purine ribonucleotide biosynthesis inosine-5'-monophosphate dehydrogenase (TIGR01302; EC 1.1.1.205; HMM-score: 182.5)
    Metabolism Purines, pyrimidines, nucleosides, and nucleotides Nucleotide and nucleoside interconversions guanosine monophosphate reductase (TIGR01305; EC 1.7.1.7; HMM-score: 176.7)
    Unknown function General IMP dehydrogenase family protein (TIGR01303; HMM-score: 144.6)
    Unknown function General IMP dehydrogenase family protein (TIGR01304; HMM-score: 56.9)
    Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Other isopentenyl-diphosphate delta-isomerase, type 2 (TIGR02151; EC 5.3.3.2; HMM-score: 28.7)
    glycosyl amidation-associated protein WbuZ (TIGR03572; HMM-score: 21)
    Metabolism Amino acid biosynthesis Histidine family 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase (TIGR00007; EC 5.3.1.16; HMM-score: 19.4)
    Metabolism Amino acid biosynthesis Histidine family imidazoleglycerol phosphate synthase, cyclase subunit (TIGR00735; HMM-score: 17.4)
    Metabolism Amino acid biosynthesis Glutamate family 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase (TIGR01182; EC 4.1.2.14,4.1.3.16; HMM-score: 15.2)
    Metabolism Energy metabolism Entner-Doudoroff 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase (TIGR01182; EC 4.1.2.14,4.1.3.16; HMM-score: 15.2)
    heme/flavin dehydrogenase, mycofactocin system (TIGR03966; EC 1.-.-.-; HMM-score: 14.3)
    geranylgeranylglyceryl phosphate synthase family protein (TIGR01768; EC 2.5.1.-; HMM-score: 13.7)
  • TheSEED: see SPG_1140
  • PFAM:
    TIM_barrel (CL0036) IMPDH; IMP dehydrogenase / GMP reductase domain (PF00478; HMM-score: 226)
    and 9 more
    FMN_dh; FMN-dependent dehydrogenase (PF01070; HMM-score: 29.2)
    NMO; Nitronate monooxygenase (PF03060; HMM-score: 25.5)
    His_biosynth; Histidine biosynthesis protein (PF00977; HMM-score: 24.7)
    TMP-TENI; Thiamine monophosphate synthase (PF02581; HMM-score: 22.3)
    DHO_dh; Dihydroorotate dehydrogenase (PF01180; HMM-score: 16.4)
    G3P_antiterm; Glycerol-3-phosphate responsive antiterminator (PF04309; HMM-score: 15.7)
    Aldolase; KDPG and KHG aldolase (PF01081; HMM-score: 13.9)
    ThiG; Thiazole biosynthesis protein ThiG (PF05690; HMM-score: 13.2)
    IGPS; Indole-3-glycerol phosphate synthase (PF00218; HMM-score: 11.8)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.009796
    • TAT(Tat/SPI): 0.000302
    • LIPO(Sec/SPII): 0.001104
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MLNEFPIFDYEDIQLIPNKCVIKSRAEADTSVTLGNHTFKLPVVPANMQTILDENVAEQLAKGGYFYIMHRFDEAGRIPFIKRMHDQGLIASISVGVKDYEYDFVSQLKADAPEYITIDIAHGHADSVISMIQHIKKELPDTFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKVKTGFGTGGWQLAAXRWCAKAARKPIIADGGIRTHGDIAKSIRFGASMIMIGSLFAGHIESPGKTIEVDGEQFKEYYGSASQYQKGAYKNVEGKRILLPAKGHLQDTLTEMEQDLQSAISYAGGRQVADLKHVDYVIVKNSIWNGDASH

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://pneumowiki.med.uni-greifswald.de/index.php?title=SPG_RS05745&oldid=71980"