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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 10-NOV-2021

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae G54
  • locus tag: SPG_RS07390 [old locus tag: SPG_1484 ]
  • pan locus tag?: PNEUPAN002891000
  • symbol: SPG_RS07390
  • pan gene symbol?: —
  • synonym:
  • product: DegV family protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SPG_RS07390 [old locus tag: SPG_1484 ]
  • symbol: SPG_RS07390
  • product: DegV family protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1432352..1433200
  • length: 849
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: NC_011072 (1432352..1433200) NCBI
  • BioCyc: SPG_RS07390 BioCyc
  • MicrobesOnline: see SPG_1484
  • PneumoBrowse for strain D39V: SPV_1388 PneumoBrowse

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    ATGAAATTAGCTGTTTTCACAGATTCCTCTGCTTATCTCAGTGAAGAGACCTTGCAAAGA
    GAAGACTTGTTTGTCTTGGATATTCCTGTCAATATTGATGGTGAGGAATATGTCGAAGGC
    ATCAATCTGTCTGCTGAGGAATTTTACCAAAAAATGGCTCAGGCTTCTGAATTGCCTAAG
    ACCAGTCAACCAAGTATTGCCAAGTTAGATGAGATCTTAACTTCGCTCAAAGAACAAGGC
    TATACACATGCCTTGGGGCTTTTCCTATCTTCTGGAATTTCAGGTTTTTACCAAAATATC
    CAGTATATGGTCGATGACTATGAGGGCTTAACCATTGCTTTCCCAGACACTTTGATTACA
    AGTGCTCCCCTAGGCATCATGGTTGAAAGCGTCTTTAATTGGCGTGATCAGGGCGATGAT
    TTTGCCAGCATTCAGGATAAGCTAGCCATTCAAATCAGCCGTACGTCAGCCTTTATCATG
    GTAGATGACTTGGATCATTTGGTAAAAGGTGGACGCCTTTCAAATGGGGCTGCCATTTTG
    GGCAATTTGCTTAGCATTAAGCCAATCCTTTATTTTAACGATCAAGGTGTGATTGAAGTT
    TACGAAAAAGTTCGTACTGAAAAGAAGGCCACCAAGCGCTTAATTGAAATTATCAAGGAA
    ACAACGGCTTCAGGTCAATACCGGGTCATTGTCATTCATGGGAATGCTCCTGAAAAGGCT
    GAAGAATTGCGTCAGCACTTGCTTGATTTTGGCTTGGGTTCGGATGTTTCACTTGCTACA
    TTTGGTAGTGTCATTGGAACGCACCTAGGAGCAGGAAGTATTGCTCTGGGTTATATTCCA
    GTGATTTAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    849

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPG_RS07390 [old locus tag: SPG_1484 ]
  • symbol: SPG_RS07390
  • description: DegV family protein
  • length: 282
  • theoretical pI: 4.37006
  • theoretical MW: 30975
  • GRAVY: 0.0450355

⊟Function[edit | edit source]

  • TIGRFAM:
    Unknown function General EDD domain protein, DegV family (TIGR00762; HMM-score: 296.9)
    and 1 more
    HAD phosphatase, family IIIC (TIGR01681; HMM-score: 13.5)
  • TheSEED: see SPG_1484
  • PFAM:
    EDD (CL0245) DegV; Uncharacterised protein, DegV family COG1307 (PF02645; HMM-score: 303.5)
    and 1 more
    Dak1_2; Dihydroxyacetone kinase family (PF13684; HMM-score: 12.8)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.002518
    • TAT(Tat/SPI): 0.000333
    • LIPO(Sec/SPII): 0.000392
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: WP_000762070 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MKLAVFTDSSAYLSEETLQREDLFVLDIPVNIDGEEYVEGINLSAEEFYQKMAQASELPKTSQPSIAKLDEILTSLKEQGYTHALGLFLSSGISGFYQNIQYMVDDYEGLTIAFPDTLITSAPLGIMVESVFNWRDQGDDFASIQDKLAIQISRTSAFIMVDDLDHLVKGGRLSNGAAILGNLLSIKPILYFNDQGVIEVYEKVRTEKKATKRLIEIIKETTASGQYRVIVIHGNAPEKAEELRQHLLDFGLGSDVSLATFGSVIGTHLGAGSIALGYIPVI

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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