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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 24-APR-2024

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae G54
  • locus tag: SPG_RS10715 [old locus tag: SPG_2147 ]
  • pan locus tag?: PNEUPAN003908000
  • symbol: cbpD
  • pan gene symbol?: cbpD
  • synonym:
  • product: choline binding-anchored murein hydrolase CbpD

⊟Additional information (user-provided)[edit | edit source]

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS, pseudogene
  • locus tag: SPG_RS10715 [old locus tag: SPG_2147 ]
  • symbol: cbpD
  • product: choline binding-anchored murein hydrolase CbpD
  • replicon: chromosome
  • strand: -
  • coordinates: 2039534..2040881
  • length: 1348
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: NC_011072 (2039534..2040881) NCBI
  • BioCyc: SPG_RS10715 BioCyc
  • MicrobesOnline: see SPG_2147
  • PneumoBrowse for strain D39V: SPV_2028 PneumoBrowse

⊟Phenotype[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    ATGAAAATTTTACCGTTTATAGCAAGAGGAACAAGTTATTACTTGAAAGATGTCAGTTAA
    AAAGCTTGTTCCTTTTTTAGTAGTAGGATTGATGCTAGCAGCTGGTGATAGTGTCTATGC
    CTATTCCAGAGGAAATGGATCGATTGCGCGTGGGGATGATTATCCTGCTTATTATAAAAA
    TGGGAGCCAGGAGATTGATCAGTGGCGCATGTATTCTCGTCAGTGTACTTCTTTTGTAGC
    CTTTCGTTTGAGTAATGTCAATGGTTTTGAAATTCCGGCAGCTTATGGAAATGCGAATGA
    ATGGGGACATCGTGCTCGTCGGGAAGGTTATCGTGTAGATAATACACCGACGATTGGTTC
    CATTACTTGGTCTACTGCAGGAACTTATGGTCATGTTGCCTGGGTGTCAAATGTAATGGG
    AGATCAGATTGAGATTGAGGAATATAACTATGGTTATACAGAATCCTATAATAAACGAAT
    TATAAAAGCAAACACGATGACAGGATTTATTCATTTTAAAGATTTGGATGGTGGCAGTGT
    TGGGAATAGTCAATCCTCAACTTCAACAGGCGGAACTCATTATTTTAAGACCAAGTCTGC
    TATCAAAACTGAACCCCTAGTTAGTGCAACTGTGATTGATTACTATTATCCTGGAGAGAA
    GGTTCATTATGATCAAATTCTCGAAAAAGACGGCTACAAGTGGTTGAGTTATACTGCCTA
    TAATGGAAGCTATCGTTATGTTCAATTGGAGGCTGTGAATAAAAATCCTCTAGGTCATTC
    TGTTCTTTCTTCAACAGGTGGAACTCATTATTTTAAGACCAAGTCTGCTATCAAAACTGA
    ACCCCTAGTTAGCGGAACTGTGATTGATTACTATTATCCTGGGGAGAAGGTTCATTATGA
    TCAGATACTTGAAAAANACNACTATAANTGGTTGAGTTATACGGCTTATAACGGAAGTCG
    TCGCTATATACAGCTAGAGGGAGTGACTTCTTCACAAAATTATCANAATCAATCAGGAAA
    TATCTCTAGCTATGGATCCAATAATAGTTCAACTGTCGGTTGGAAGAAAATAAATGGTAG
    TTGGTATCATTTCAAATCAAATGGTTCTAAATCAACAGGATGGCTGAAAGACGGTTCTAG
    CTGGTATTATTTGAAATTATCTGGTGAAATGCAGACAGGATGGTTAAAGGAGAATGGCTC
    GTGGTATTATCTGGGTAGTTCAGGGGCAATGAAAACAGGCTGGTACCAGGTCTCTGGTAA
    GTGGTATTATTCTTACTCTTCAGGCGCCTTAGCTGTTAATACGACGGTGGATGGCTACAG
    AGTAAACAGTGATGGAGAACGAGTATAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1348


⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SPG_RS10715 [old locus tag: SPG_2147 ]
  • symbol: CbpD
  • description: choline binding-anchored murein hydrolase CbpD
  • length:
  • theoretical pI:
  • theoretical MW:
  • GRAVY:

⊟Function[edit | edit source]

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb:
  • DeepLocPro:
  • SignalP:
  • predicted transmembrane helices (TMHMM):

⊟Accession numbers[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Protein sequence[edit | edit source]

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Transcription[edit | edit source]

  • transcription start site:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟'lacZ' fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Other information (user-provided)[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]


⊟Relevant publications[edit | edit source]

Vegard Eldholm, Ola Johnsborg, Kristine Haugen, Hilde Solheim Ohnstad, Leiv Sigve Håvarstein
Fratricide in Streptococcus pneumoniae: contributions and role of the cell wall hydrolases CbpD, LytA and LytC.
Microbiology (Reading): 2009, 155(Pt 7);2223-2234
[PubMed:19389766] [WorldCat.org] [DOI] (P p)

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