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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 31-JAN-2014
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae Hungary19A-6
- locus tag: SPH_0347 [new locus tag: SPH_RS01675 ]
- pan locus tag?: PNEUPAN000985000
- symbol: rpsM
- pan gene symbol?: rpsM
- synonym:
- product: ribosomal protein S13p/S18e
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SPH_0347 [new locus tag: SPH_RS01675 ]
- symbol: rpsM
- product: ribosomal protein S13p/S18e
- replicon: chromosome
- strand: +
- coordinates: 295929..296294
- length: 366
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: CP000936 (295929..296294) NCBI
- BioCyc: see SPH_RS01675
- MicrobesOnline: 5695200 MicrobesOnline
- PneumoBrowse for strain D39V: SPV_0216 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181
241
301
361ATGGCTCGTATTGCTGGAGTTGATATTCCAAATGACAAACGCGTAGTAATTTCATTGACT
TATGTTTATGGTATCGGACTTGCAACATCTAAGAAAATTTTGGCTGCTGCTGGAATCTCA
GAAGATGTTCGTGTACGTGATCTTACATCAGATCAAGAAGATGCTATCCGTCGTGAAGTG
GATGCAATCAAAGTTGAAGGTGACCTTCGTCGTGAAGTAAACTTGAACATCAAACGTTTG
ATGGAAATCGGTTCATACCGTGGTATCCGTCACCGTCGTGGACTTCCTGTCCGTGGACAA
AATACTAAAAACAACGCTCGCACTCGTAAAGGTAAAGCTGTTGCGATTGCTGGTAAGAAA
AAATAA60
120
180
240
300
360
366
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SPH_0347 [new locus tag: SPH_RS01675 ]
- symbol: RpsM
- description: ribosomal protein S13p/S18e
- length: 121
- theoretical pI: 11.2821
- theoretical MW: 13421.5
- GRAVY: -0.480165
⊟Function[edit | edit source]
- TIGRFAM: Protein synthesis Ribosomal proteins: synthesis and modification ribosomal protein uS13 (TIGR03631; HMM-score: 171.1)and 1 moreProtein synthesis Ribosomal proteins: synthesis and modification ribosomal protein uS13 (TIGR03629; HMM-score: 66.8)
- TheSEED :
- SSU ribosomal protein S13p (S18e)
- PFAM: H2TH (CL0303) Ribosomal_S13; Ribosomal protein S13/S18 (PF00416; HMM-score: 112.5)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 9.97
- Cytoplasmic Membrane Score: 0
- Cellwall Score: 0.01
- Extracellular Score: 0.02
- Internal Helices: 0
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.034586
- TAT(Tat/SPI): 0.007678
- LIPO(Sec/SPII): 0.003582
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MARIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGISEDVRVRDLTSDQEDAIRREVDAIKVEGDLRREVNLNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_0216 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.