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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 31-JAN-2014
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae Hungary19A-6
- locus tag: SPH_0681 [new locus tag: SPH_RS03310 ]
- pan locus tag?: PNEUPAN001474000
- symbol: SPH_0681
- pan gene symbol?: —
- synonym:
- product: endonuclease/exonuclease/phosphatase family
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SPH_0681 [new locus tag: SPH_RS03310 ]
- symbol: SPH_0681
- product: endonuclease/exonuclease/phosphatase family
- replicon: chromosome
- strand: -
- coordinates: 626376..627377
- length: 1002
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: CP000936 (626376..627377) NCBI
- BioCyc: see SPH_RS03310
- MicrobesOnline: 5695524 MicrobesOnline
- PneumoBrowse for strain D39V: SPV_0507 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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961ATGATTAAAACATTTCTCTCTGCCCTTTCGGTCATTCTCTTTTCTATCCCTATCATAACT
TATTCTTTTTTCCCATCTTCTAATCTTAACATTTGGCTATCTACCCAACCTATCTTGGCA
CAGATTTATGCCTTCCCCTTAGCTACTGCAACTATGGCTGCTATTTTAAGTTTCTTATTT
TTTTTCCTATCTTTTTACAAGAAAAATAAACAAATACGGTTTTACTCTGGCATTTTGCTC
TTACTATCGCTCATATTACTATTATTCGGAACAGATAAAATCCTTTCTTCTGCATCAAAT
AAGACTAAAACCTTAAAATTAGTAACTTGGAACGTCGCTAATCAAATAGAAGCACAACAT
ATTGAGCGAATTTTTAGCCATTTTGACGCCGATATGGCTATATTCCCTGAACTAGCTACC
AATATCAGAGGTGAGCAAGAAAACCAGAGAATCAAACTATTGTTTCATCAAGTTGGACTT
TCTATGGCCAACTATGATATTTTCACTTCTCCACCTACCAATAGTGGAATAGCTCCTGTG
ACTGTGATTGTCAAGAAAAGTTATGGTTTCTATACAGAAGCTGAAACTTTTCATACAACA
CGGTTCGGGACAATTGTATTACATTCGAGAAAACAAGATATACCAGATATCATTGCTTTG
CATACTGCTCCTCCTCTGCCAGGTTTAATGGAAATCTGGAAGCAAGACTTAAACATCATT
CATAATCAATTGGCTTCAAAATATCCAAAGGCTATTATTGCAGGTGATTTTAATGCAACT
ATGCGTCATGGAGCACTTGCAAAAATAAGCTCTCATAGGGACGCATTAAATGCACTGCCA
CCTTTTGAAAGAGGAACTTGGAATAGCCAAAGTCCAAAACTTTTTAATGCAACGATAGAT
CATATTTTATTGCCTAAAAACCACTACTATGTTAAAGATTTAGACATTGTAAGTTTTCAA
AACTCTGATCATAGATGTATTTTTACAGAAATCACATTTTAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SPH_0681 [new locus tag: SPH_RS03310 ]
- symbol: SPH_0681
- description: endonuclease/exonuclease/phosphatase family
- length: 333
- theoretical pI: 9.68473
- theoretical MW: 37714.6
- GRAVY: 0.165465
⊟Function[edit | edit source]
- TIGRFAM: Protein fate Protein and peptide secretion and trafficking twin arginine-targeting protein translocase, TatA/E family (TIGR01411; HMM-score: 15.7)
- TheSEED :
- putative integral membrane protein (possible nuclease activity)
- PFAM: DNase_I-like (CL0530) Exo_endo_phos; Endonuclease/Exonuclease/phosphatase family (PF03372; HMM-score: 31.9)and 2 moreExo_endo_phos_2; Endonuclease-reverse transcriptase (PF14529; HMM-score: 16.7)O-anti_assembly (CL0499) Wzy_C; O-Antigen ligase (PF04932; HMM-score: 15.7)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 3
- DeepLocPro: Cytoplasmic Membrane
- Cytoplasmic Score: 0.0024
- Cytoplasmic Membrane Score: 0.9479
- Cell wall & surface Score: 0
- Extracellular Score: 0.0497
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.04138
- TAT(Tat/SPI): 0.000484
- LIPO(Sec/SPII): 0.149896
- predicted transmembrane helices (TMHMM): 3
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MIKTFLSALSVILFSIPIITYSFFPSSNLNIWLSTQPILAQIYAFPLATATMAAILSFLFFFLSFYKKNKQIRFYSGILLLLSLILLLFGTDKILSSASNKTKTLKLVTWNVANQIEAQHIERIFSHFDADMAIFPELATNIRGEQENQRIKLLFHQVGLSMANYDIFTSPPTNSGIAPVTVIVKKSYGFYTEAETFHTTRFGTIVLHSRKQDIPDIIALHTAPPLPGLMEIWKQDLNIIHNQLASKYPKAIIAGDFNATMRHGALAKISSHRDALNALPPFERGTWNSQSPKLFNATIDHILLPKNHYYVKDLDIVSFQNSDHRCIFTEITF
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- MicrobesOnline: no polycistronic organisation predicted
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription[edit | edit source]
- transcription start site:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_0507 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]