Jump to navigation
Jump to search
PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 31-JAN-2014
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae Hungary19A-6
- locus tag: SPH_1399 [new locus tag: SPH_RS06770 ]
- pan locus tag?: PNEUPAN002536000
- symbol: SPH_1399
- pan gene symbol?: htpX
- synonym:
- product: putative Probable protease HtpX homolog
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SPH_1399 [new locus tag: SPH_RS06770 ]
- symbol: SPH_1399
- product: putative Probable protease HtpX homolog
- replicon: chromosome
- strand: -
- coordinates: 1299754..1300653
- length: 900
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: CP000936 (1299754..1300653) NCBI
- BioCyc: see SPH_RS06770
- MicrobesOnline: 5696227 MicrobesOnline
- PneumoBrowse for strain D39V: SPV_1138 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181
241
301
361
421
481
541
601
661
721
781
841ATGTTGTTTGATCAAATTGCAAGCAATAAACGAAAAACCTGGATTTTGTTGCTGGTATTT
TTCCTACTCTTAGCTCTTGTTGGTTATGCGGTTGGTTATCTCTTTATAAGATCTGGACTT
GGTGGTTTGGTTATCGCACTGATTATCGGCTTTATCTACGCTTTGTCTATGATTTTTCAA
TCGACAGAGATTGTCATGTCCATGAATGGAGCGCGTGAGGTGGATGAGCAAACGGCACCA
GACCTCTACCATGTAGTGGAAGATATGGCTCTGGTCGCTCAGATTCCTATGCCCCGTGTT
TTCATCATTGATGATCCAGCCTTAAATGCCTTTGCGACAGGTTCTAATCCTCAAAATGCG
GCTGTTGCTGCGACTTCAGGTCTACTAGCTATCATGAATCGTGAAGAACTAGAAGCTGTT
ATGGGACATGAAGTCAGTCATATTCGTAATTATGATATCCGTATTTCGACTATTGCAGTT
GCCCTTGTTAGTGCTATCACCATGCTTTCTGGTATGGCAGGTCGTATGATGTGGTGGGGT
GGAGCAGGTCGCAGACGAAGTGATGATGACCGAGATGGAAATGGTCTTGAAATCATTATG
CTAGTGGTTTCCCTACTAGCTATTGTACTGGCACCTCTCGCTGCAACCTTGGTTCAGCTC
GCTATTTCTCGTCAGAGGGAATTTCTGGCAGATGCATCTAGTGTCGAGCTGACTCGCAAT
CCCCAGGGAATGATTAATGCCCTAGATAAGTTGGACAATAGCAAACCTATGAGTCGCCAC
GTCGATGATGCTAGCAGTGCTCTTTATATCAATGATCCCAAGAAAGGTGGGGGGTTCCAA
AAACTCTTTTATACCCACCCACCTATCTCAGAACGGATTGAACGTTTAAAACAGATGTAA60
120
180
240
300
360
420
480
540
600
660
720
780
840
900
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SPH_1399 [new locus tag: SPH_RS06770 ]
- symbol: SPH_1399
- description: putative Probable protease HtpX homolog
- length: 299
- theoretical pI: 6.03384
- theoretical MW: 32794.1
- GRAVY: 0.303679
⊟Function[edit | edit source]
- reaction: EC 3.4.24.-? ExPASy
- TIGRFAM:
- TheSEED :
- Heat shock protein HtpX
- PFAM: Peptidase_MA (CL0126) Peptidase_M48; Peptidase family M48 (PF01435; HMM-score: 129.3)and 7 morePeptidase_M56; BlaR1 peptidase M56 (PF05569; HMM-score: 16.2)no clan defined EI24; Etoposide-induced protein 2.4 (EI24) (PF07264; HMM-score: 15.3)Peroxisome (CL0484) Reticulon; Reticulon (PF02453; HMM-score: 14.4)no clan defined SecD-TM1; SecD export protein N-terminal TM region (PF13721; HMM-score: 13.9)Peptidase_MA (CL0126) DUF5700; Putative zinc dependent peptidase (DUF5700) (PF18958; HMM-score: 13.7)ABC-2 (CL0181) ABC2_membrane_3; ABC-2 family transporter protein (PF12698; HMM-score: 8.9)no clan defined DUF2207; Predicted membrane protein (DUF2207) (PF09972; HMM-score: 7.2)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 4
- DeepLocPro: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 0.9992
- Cell wall & surface Score: 0
- Extracellular Score: 0.0008
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.003189
- TAT(Tat/SPI): 0.001135
- LIPO(Sec/SPII): 0.016173
- predicted transmembrane helices (TMHMM): 4
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MLFDQIASNKRKTWILLLVFFLLLALVGYAVGYLFIRSGLGGLVIALIIGFIYALSMIFQSTEIVMSMNGAREVDEQTAPDLYHVVEDMALVAQIPMPRVFIIDDPALNAFATGSNPQNAAVAATSGLLAIMNREELEAVMGHEVSHIRNYDIRISTIAVALVSAITMLSGMAGRMMWWGGAGRRRSDDDRDGNGLEIIMLVVSLLAIVLAPLAATLVQLAISRQREFLADASSVELTRNPQGMINALDKLDNSKPMSRHVDDASSALYINDPKKGGGFQKLFYTHPPISERIERLKQM
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription[edit | edit source]
- transcription start site:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_1138 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]